Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Clec4a3-201ENSMUST00000088468 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col1a1P11087 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col1a1P11087 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col1a1P11087 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col1a1P11087 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col1a1P11087 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col1a1P11087 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col1a1P11087 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col1a1P11087 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col1a1P11087 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC14.16□□□□□ -0.14
Col1a1P11087 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col1a1P11087 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col1a1P11087 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col1a1P11087 Acrbp-204ENSMUST00000112413 672 ntTSL 2 BASIC14.16□□□□□ -0.14
Col1a1P11087 1700080O16Rik-202ENSMUST00000114866 1232 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col1a1P11087 Gm13022-201ENSMUST00000121181 285 ntBASIC14.16□□□□□ -0.14
Col1a1P11087 Tbata-203ENSMUST00000121297 1000 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col1a1P11087 BB557941-201ENSMUST00000126549 1097 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col1a1P11087 Gm4862-201ENSMUST00000170405 438 ntBASIC14.16□□□□□ -0.14
Col1a1P11087 1110059E24Rik-208ENSMUST00000179768 962 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
Col1a1P11087 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col1a1P11087 AC168279.1-201ENSMUST00000214611 382 ntBASIC14.16□□□□□ -0.14
Col1a1P11087 AC159376.1-201ENSMUST00000218504 630 ntBASIC14.16□□□□□ -0.14
Col1a1P11087 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col1a1P11087 Gm36423-202ENSMUST00000222215 1298 ntTSL 5 BASIC14.16□□□□□ -0.14
Col1a1P11087 Mgp-201ENSMUST00000032342 617 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col1a1P11087 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Col1a1P11087 Rpl4-201ENSMUST00000034966 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col1a1P11087 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col1a1P11087 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col1a1P11087 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Col1a1P11087 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Col1a1P11087 Gm16237-201ENSMUST00000156666 1319 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col1a1P11087 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC14.16□□□□□ -0.14
Col1a1P11087 AC166836.1-201ENSMUST00000219933 1795 ntBASIC14.16□□□□□ -0.14
Col1a1P11087 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col1a1P11087 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC14.16□□□□□ -0.14
Col1a1P11087 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col1a1P11087 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col1a1P11087 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col1a1P11087 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col1a1P11087 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col1a1P11087 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
Col1a1P11087 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC14.15□□□□□ -0.14
Col1a1P11087 Zfp809-201ENSMUST00000072465 1425 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col1a1P11087 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col1a1P11087 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col1a1P11087 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC14.15□□□□□ -0.14
Col1a1P11087 Gm15784-201ENSMUST00000120260 1462 ntBASIC14.15□□□□□ -0.14
Col1a1P11087 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Col1a1P11087 Otx2-202ENSMUST00000119070 1708 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col1a1P11087 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Col1a1P11087 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col1a1P11087 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col1a1P11087 Gm8038-201ENSMUST00000164674 2044 ntBASIC14.15□□□□□ -0.14
Col1a1P11087 Gm10479-201ENSMUST00000101568 318 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Col1a1P11087 Gm11783-201ENSMUST00000119549 885 ntBASIC14.15□□□□□ -0.14
Col1a1P11087 Spata3-207ENSMUST00000135440 732 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col1a1P11087 Gm16271-201ENSMUST00000162837 220 ntTSL 5 BASIC14.15□□□□□ -0.14
Col1a1P11087 1700088E04Rik-210ENSMUST00000190509 871 ntTSL 5 BASIC14.15□□□□□ -0.14
Col1a1P11087 Gm37013-201ENSMUST00000194544 313 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Col1a1P11087 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC14.15□□□□□ -0.14
Col1a1P11087 D5Ertd615e-203ENSMUST00000198493 1032 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col1a1P11087 Gm18059-201ENSMUST00000208073 580 ntBASIC14.15□□□□□ -0.14
Col1a1P11087 Gm7972-202ENSMUST00000208453 505 ntTSL 3 BASIC14.15□□□□□ -0.14
Col1a1P11087 Ly6i-201ENSMUST00000023250 1156 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col1a1P11087 Spata3-201ENSMUST00000052854 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col1a1P11087 1700001K19Rik-201ENSMUST00000070659 955 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col1a1P11087 Gm5805-201ENSMUST00000072779 456 ntBASIC14.15□□□□□ -0.14
Col1a1P11087 Gm44260-201ENSMUST00000204946 2094 ntBASIC14.15□□□□□ -0.14
Col1a1P11087 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col1a1P11087 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col1a1P11087 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col1a1P11087 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col1a1P11087 Gm36970-201ENSMUST00000193688 1859 ntBASIC14.15□□□□□ -0.14
Col1a1P11087 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col1a1P11087 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Col1a1P11087 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC14.15□□□□□ -0.14
Col1a1P11087 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC14.15□□□□□ -0.14
Col1a1P11087 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col1a1P11087 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
Col1a1P11087 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col1a1P11087 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC14.14□□□□□ -0.15
Col1a1P11087 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col1a1P11087 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col1a1P11087 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col1a1P11087 AC154747.3-201ENSMUST00000224471 3470 ntBASIC14.14□□□□□ -0.15
Col1a1P11087 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col1a1P11087 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col1a1P11087 Gad1-207ENSMUST00000148210 1021 ntTSL 5 BASIC14.14□□□□□ -0.15
Col1a1P11087 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC14.14□□□□□ -0.15
Col1a1P11087 Taar8c-201ENSMUST00000170267 1035 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Col1a1P11087 Gm28836-201ENSMUST00000185842 633 ntTSL 2 BASIC14.14□□□□□ -0.15
Col1a1P11087 Gm29292-201ENSMUST00000186169 766 ntTSL 3 BASIC14.14□□□□□ -0.15
Col1a1P11087 Gm43001-201ENSMUST00000198925 603 ntTSL 3 BASIC14.14□□□□□ -0.15
Col1a1P11087 Taar8a-201ENSMUST00000051133 1035 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Col1a1P11087 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col1a1P11087 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col1a1P11087 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col1a1P11087 Ccndbp1-203ENSMUST00000099489 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 58.7 ms