Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL3A1P02461 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC19.85■□□□□ 0.77
COL3A1P02461 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL3A1P02461 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL3A1P02461 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL3A1P02461 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.85■□□□□ 0.77
COL3A1P02461 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL3A1P02461 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL3A1P02461 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC19.85■□□□□ 0.77
COL3A1P02461 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL3A1P02461 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
COL3A1P02461 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC19.85■□□□□ 0.77
COL3A1P02461 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL3A1P02461 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC19.85■□□□□ 0.77
COL3A1P02461 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
COL3A1P02461 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC19.85■□□□□ 0.77
COL3A1P02461 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL3A1P02461 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL3A1P02461 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC19.85■□□□□ 0.77
COL3A1P02461 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL3A1P02461 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC19.85■□□□□ 0.77
COL3A1P02461 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL3A1P02461 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC19.85■□□□□ 0.77
COL3A1P02461 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL3A1P02461 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL3A1P02461 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
COL3A1P02461 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL3A1P02461 PFN1P12-201ENST00000455938 534 ntBASIC19.85■□□□□ 0.77
COL3A1P02461 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC19.85■□□□□ 0.77
COL3A1P02461 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC19.85■□□□□ 0.77
COL3A1P02461 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC19.85■□□□□ 0.77
COL3A1P02461 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC19.85■□□□□ 0.77
COL3A1P02461 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
COL3A1P02461 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL3A1P02461 AC104982.3-201ENST00000581995 514 ntBASIC19.85■□□□□ 0.77
COL3A1P02461 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC19.85■□□□□ 0.77
COL3A1P02461 AC244093.1-201ENST00000610837 814 ntBASIC19.85■□□□□ 0.77
COL3A1P02461 GPR182-203ENST00000622922 591 ntBASIC19.85■□□□□ 0.77
COL3A1P02461 MARS-233ENST00000628866 2583 ntTSL 5 BASIC19.85■□□□□ 0.77
COL3A1P02461 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL3A1P02461 KRT8P28-201ENST00000433288 1390 ntBASIC19.85■□□□□ 0.77
COL3A1P02461 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL3A1P02461 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL3A1P02461 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC19.84■□□□□ 0.77
COL3A1P02461 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL3A1P02461 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL3A1P02461 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL3A1P02461 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL3A1P02461 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL3A1P02461 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL3A1P02461 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC19.84■□□□□ 0.77
COL3A1P02461 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.84■□□□□ 0.77
COL3A1P02461 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC19.84■□□□□ 0.77
COL3A1P02461 GPAA1P2-201ENST00000417923 928 ntBASIC19.84■□□□□ 0.77
COL3A1P02461 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC19.84■□□□□ 0.77
COL3A1P02461 AC018442.1-201ENST00000421439 2061 ntBASIC19.84■□□□□ 0.77
COL3A1P02461 AC244394.1-201ENST00000435000 1665 ntBASIC19.84■□□□□ 0.77
COL3A1P02461 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
COL3A1P02461 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC19.84■□□□□ 0.77
COL3A1P02461 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC19.84■□□□□ 0.77
COL3A1P02461 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC19.84■□□□□ 0.77
COL3A1P02461 AC004898.1-201ENST00000451057 766 ntBASIC19.84■□□□□ 0.77
COL3A1P02461 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL3A1P02461 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
COL3A1P02461 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
COL3A1P02461 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL3A1P02461 MX1-218ENST00000619682 1980 ntTSL 5 BASIC19.84■□□□□ 0.77
COL3A1P02461 PCBP2-OT1-201ENST00000634357 590 ntBASIC19.84■□□□□ 0.77
COL3A1P02461 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
COL3A1P02461 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL3A1P02461 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL3A1P02461 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL3A1P02461 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL3A1P02461 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL3A1P02461 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
COL3A1P02461 AC144831.1-201ENST00000573312 2656 ntBASIC19.83■□□□□ 0.77
COL3A1P02461 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
COL3A1P02461 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
COL3A1P02461 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL3A1P02461 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
COL3A1P02461 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL3A1P02461 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL3A1P02461 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC19.83■□□□□ 0.77
COL3A1P02461 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
COL3A1P02461 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL3A1P02461 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC19.83■□□□□ 0.77
COL3A1P02461 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL3A1P02461 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
COL3A1P02461 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL3A1P02461 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
COL3A1P02461 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL3A1P02461 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL3A1P02461 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC19.83■□□□□ 0.76
COL3A1P02461 AC044849.1-201ENST00000519737 1188 ntBASIC19.83■□□□□ 0.76
COL3A1P02461 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL3A1P02461 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL3A1P02461 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL3A1P02461 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.76
COL3A1P02461 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL3A1P02461 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms