Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim47Q8C0E3 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim47Q8C0E3 Gm38355-201ENSMUST00000192514 1570 ntBASIC13.62□□□□□ -0.23
Trim47Q8C0E3 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC13.62□□□□□ -0.23
Trim47Q8C0E3 Gm37660-201ENSMUST00000192754 1732 ntBASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Mir3547-201ENSMUST00000175461 88 ntBASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Gm16505-201ENSMUST00000179981 232 ntBASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Gm37666-201ENSMUST00000194110 866 ntBASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Gm45433-201ENSMUST00000209386 247 ntBASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Aprt-ps-201ENSMUST00000212311 505 ntBASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Gm18363-201ENSMUST00000221671 730 ntBASIC13.61□□□□□ -0.23
Trim47Q8C0E3 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 AC159205.5-202ENSMUST00000224849 386 ntBASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim47Q8C0E3 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Gm43677-201ENSMUST00000198098 2378 ntBASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Gm11439-201ENSMUST00000118598 409 ntBASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Gm24749-201ENSMUST00000157838 343 ntBASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Gm16570-201ENSMUST00000161951 436 ntBASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Rn7s1-201ENSMUST00000174924 300 ntBASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Rn7s2-201ENSMUST00000175032 300 ntBASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Gm26461-201ENSMUST00000175064 290 ntBASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Gm26952-201ENSMUST00000181996 409 ntTSL 3 BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Gm17812-201ENSMUST00000204935 318 ntBASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 AC113441.2-201ENSMUST00000221538 1468 ntBASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Trim47Q8C0E3 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Trim47Q8C0E3 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC13.59□□□□□ -0.23
Trim47Q8C0E3 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim47Q8C0E3 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim47Q8C0E3 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim47Q8C0E3 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Trim47Q8C0E3 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Trim47Q8C0E3 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim47Q8C0E3 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Trim47Q8C0E3 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms