Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 5330413D20Rik-201ENSMUST00000208649 1416 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Col18a1P39061 Atp5s-204ENSMUST00000220916 1599 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col18a1P39061 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col18a1P39061 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col18a1P39061 Evi2a-201ENSMUST00000103236 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col18a1P39061 AC159810.1-201ENSMUST00000214838 1480 ntBASIC15.81■□□□□ 0.12
Col18a1P39061 Alox5-207ENSMUST00000170186 1929 ntTSL 5 BASIC15.81■□□□□ 0.12
Col18a1P39061 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col18a1P39061 AC107763.1-201ENSMUST00000226082 1365 ntBASIC15.81■□□□□ 0.12
Col18a1P39061 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col18a1P39061 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col18a1P39061 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
Col18a1P39061 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col18a1P39061 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col18a1P39061 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Col18a1P39061 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
Col18a1P39061 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col18a1P39061 Gm15136-201ENSMUST00000120552 533 ntBASIC15.81■□□□□ 0.12
Col18a1P39061 Gm14798-201ENSMUST00000139695 1189 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Col18a1P39061 Fhit-201ENSMUST00000160340 1094 ntTSL 5 BASIC15.81■□□□□ 0.12
Col18a1P39061 Gm17221-201ENSMUST00000163909 481 ntBASIC15.81■□□□□ 0.12
Col18a1P39061 Gm17073-201ENSMUST00000168069 556 ntBASIC15.81■□□□□ 0.12
Col18a1P39061 Gm9630-201ENSMUST00000178304 885 ntBASIC15.81■□□□□ 0.12
Col18a1P39061 Fhit-208ENSMUST00000179394 453 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Col18a1P39061 4933402C05Rik-201ENSMUST00000208189 1035 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Col18a1P39061 Ctrl-201ENSMUST00000034368 879 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col18a1P39061 Tcl1b5-201ENSMUST00000000717 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col18a1P39061 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col18a1P39061 Gm18983-201ENSMUST00000222884 2729 ntBASIC15.81■□□□□ 0.12
Col18a1P39061 Slc9a3-204ENSMUST00000225423 2589 ntAPPRIS ALT2 BASIC15.81■□□□□ 0.12
Col18a1P39061 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Col18a1P39061 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col18a1P39061 1500002C15Rik-201ENSMUST00000178987 2183 ntBASIC15.81■□□□□ 0.12
Col18a1P39061 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col18a1P39061 Styk1-202ENSMUST00000121078 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col18a1P39061 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC15.81■□□□□ 0.12
Col18a1P39061 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col18a1P39061 Rad18-204ENSMUST00000113182 2220 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Col18a1P39061 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col18a1P39061 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col18a1P39061 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col18a1P39061 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Grk3-204ENSMUST00000197888 1938 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
Col18a1P39061 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC15.8■□□□□ 0.12
Col18a1P39061 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Ifna9-201ENSMUST00000102807 573 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Col18a1P39061 Gm25148-201ENSMUST00000104611 123 ntBASIC15.8■□□□□ 0.12
Col18a1P39061 Gm3409-202ENSMUST00000110599 1154 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
Col18a1P39061 Tprkb-204ENSMUST00000113752 749 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Col18a1P39061 Gm12986-201ENSMUST00000119037 967 ntBASIC15.8■□□□□ 0.12
Col18a1P39061 Tspan32os-201ENSMUST00000131740 975 ntTSL 2 BASIC15.8■□□□□ 0.12
Col18a1P39061 Tpi1-203ENSMUST00000149610 802 ntTSL 2 BASIC15.8■□□□□ 0.12
Col18a1P39061 Cd79b-202ENSMUST00000167143 1195 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Gm17606-201ENSMUST00000169818 234 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Col18a1P39061 Gm3415-202ENSMUST00000179214 1154 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
Col18a1P39061 Gm9625-201ENSMUST00000180422 955 ntBASIC15.8■□□□□ 0.12
Col18a1P39061 Gm8705-201ENSMUST00000180823 812 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Gm3409-203ENSMUST00000199142 1167 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Col18a1P39061 Gm3402-203ENSMUST00000200228 1154 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
Col18a1P39061 Klk1b15-ps-201ENSMUST00000206273 715 ntBASIC15.8■□□□□ 0.12
Col18a1P39061 CT010480.2-201ENSMUST00000225424 737 ntBASIC15.8■□□□□ 0.12
Col18a1P39061 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
Col18a1P39061 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Col18a1P39061 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC15.8■□□□□ 0.12
Col18a1P39061 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Rnf17-202ENSMUST00000223627 2077 ntBASIC15.8■□□□□ 0.12
Col18a1P39061 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Gapdhs-203ENSMUST00000182634 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Krt40-202ENSMUST00000107443 1080 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Gm16048-201ENSMUST00000134250 663 ntTSL 3 BASIC15.8■□□□□ 0.12
Col18a1P39061 Gm11457-203ENSMUST00000146846 676 ntTSL 3 BASIC15.8■□□□□ 0.12
Col18a1P39061 Ly6i-202ENSMUST00000166694 620 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Gm7929-201ENSMUST00000178711 624 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Col18a1P39061 Gm3015-202ENSMUST00000179803 624 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Col18a1P39061 1110036E04Rik-201ENSMUST00000181151 777 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Gm44696-201ENSMUST00000181943 1229 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 1700088E04Rik-211ENSMUST00000190730 691 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Gm37851-201ENSMUST00000193871 889 ntBASIC15.8■□□□□ 0.12
Col18a1P39061 Abhd4-208ENSMUST00000199338 868 ntTSL 3 BASIC15.8■□□□□ 0.12
Col18a1P39061 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC15.8■□□□□ 0.12
Col18a1P39061 Il34-201ENSMUST00000076846 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col18a1P39061 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC15.79■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 86.8 ms