Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Gm15352-201ENSMUST00000118696 270 ntBASIC10.92□□□□□ -0.66
Col5a1O88207 Gm6630-201ENSMUST00000119199 454 ntBASIC10.92□□□□□ -0.66
Col5a1O88207 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC10.92□□□□□ -0.66
Col5a1O88207 Gm16081-201ENSMUST00000155992 684 ntTSL 3 BASIC10.92□□□□□ -0.66
Col5a1O88207 Znrd1-202ENSMUST00000172518 710 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Col5a1O88207 Gm8815-201ENSMUST00000173809 620 ntBASIC10.92□□□□□ -0.66
Col5a1O88207 Gm5706-201ENSMUST00000181525 993 ntBASIC10.92□□□□□ -0.66
Col5a1O88207 Ly6e-207ENSMUST00000187606 735 ntAPPRIS P1 TSL 2 BASIC10.92□□□□□ -0.66
Col5a1O88207 Gm9116-201ENSMUST00000192400 1018 ntBASIC10.92□□□□□ -0.66
Col5a1O88207 CT485606.1-201ENSMUST00000213187 878 ntBASIC10.92□□□□□ -0.66
Col5a1O88207 AC098716.1-201ENSMUST00000213527 703 ntBASIC10.92□□□□□ -0.66
Col5a1O88207 Ap3s1-202ENSMUST00000224622 978 ntBASIC10.92□□□□□ -0.66
Col5a1O88207 Mgp-201ENSMUST00000032342 617 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Col5a1O88207 Hils1-201ENSMUST00000038928 864 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
Col5a1O88207 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Col5a1O88207 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Col5a1O88207 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Col5a1O88207 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Col5a1O88207 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Col5a1O88207 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC10.92□□□□□ -0.66
Col5a1O88207 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
Col5a1O88207 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Col5a1O88207 Hddc3-201ENSMUST00000032747 1510 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Col5a1O88207 Gm44260-201ENSMUST00000204946 2094 ntBASIC10.92□□□□□ -0.66
Col5a1O88207 Gm4755-201ENSMUST00000181803 2647 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Col5a1O88207 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Col5a1O88207 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC10.92□□□□□ -0.66
Col5a1O88207 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Col5a1O88207 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC10.91□□□□□ -0.66
Col5a1O88207 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Mir181d-201ENSMUST00000102383 72 ntBASIC10.91□□□□□ -0.66
Col5a1O88207 Gm16001-201ENSMUST00000127989 875 ntTSL 3 BASIC10.91□□□□□ -0.66
Col5a1O88207 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC10.91□□□□□ -0.66
Col5a1O88207 Gm14236-201ENSMUST00000142374 872 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC10.91□□□□□ -0.66
Col5a1O88207 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Gm4310-201ENSMUST00000177847 889 ntBASIC10.91□□□□□ -0.66
Col5a1O88207 Psmb6-201ENSMUST00000018430 798 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Gm27232-201ENSMUST00000184373 597 ntTSL 3 BASIC10.91□□□□□ -0.66
Col5a1O88207 Gm9645-201ENSMUST00000197131 792 ntBASIC10.91□□□□□ -0.66
Col5a1O88207 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC10.91□□□□□ -0.66
Col5a1O88207 Gm7596-202ENSMUST00000202171 737 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 4930413E15Rik-201ENSMUST00000202500 1290 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Gm3017-201ENSMUST00000203603 1126 ntBASIC10.91□□□□□ -0.66
Col5a1O88207 Gm45570-201ENSMUST00000211137 495 ntTSL 5 BASIC10.91□□□□□ -0.66
Col5a1O88207 Gm33979-201ENSMUST00000219486 691 ntTSL 5 BASIC10.91□□□□□ -0.66
Col5a1O88207 Gpr137b-ps-202ENSMUST00000220647 1159 ntBASIC10.91□□□□□ -0.66
Col5a1O88207 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Col5a1O88207 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Zmynd11-206ENSMUST00000110637 3770 ntTSL 5 BASIC10.91□□□□□ -0.66
Col5a1O88207 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 E330011O21Rik-202ENSMUST00000209498 1403 ntTSL 5 BASIC10.91□□□□□ -0.66
Col5a1O88207 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC10.91□□□□□ -0.66
Col5a1O88207 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Col5a1O88207 Gm11949-201ENSMUST00000117640 372 ntBASIC10.91□□□□□ -0.66
Col5a1O88207 Gm11663-201ENSMUST00000117888 290 ntBASIC10.91□□□□□ -0.66
Col5a1O88207 Gm13019-201ENSMUST00000120000 276 ntBASIC10.91□□□□□ -0.66
Col5a1O88207 Gm15409-201ENSMUST00000135240 520 ntTSL 2 BASIC10.91□□□□□ -0.66
Col5a1O88207 Gm20662-201ENSMUST00000176356 601 ntAPPRIS P5 TSL 3 BASIC10.91□□□□□ -0.66
Col5a1O88207 Wdr53-204ENSMUST00000178573 1153 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Col5a1O88207 Ly6c1-202ENSMUST00000179762 838 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC10.91□□□□□ -0.66
Col5a1O88207 Mmp7-201ENSMUST00000018767 1068 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Gm8531-201ENSMUST00000188319 893 ntBASIC10.91□□□□□ -0.66
Col5a1O88207 Gm37013-201ENSMUST00000194544 313 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Col5a1O88207 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC10.91□□□□□ -0.66
Col5a1O88207 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Fam83a-201ENSMUST00000050374 1189 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Col5a1O88207 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Col5a1O88207 Gm43807-201ENSMUST00000200678 1781 ntBASIC10.9□□□□□ -0.66
Col5a1O88207 Brd4-202ENSMUST00000114475 2731 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Col5a1O88207 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Col5a1O88207 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Col5a1O88207 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Col5a1O88207 Lta-201ENSMUST00000025266 1383 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Col5a1O88207 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Col5a1O88207 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Col5a1O88207 Aldoc-202ENSMUST00000102478 1700 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 60.6 ms