Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Gtf2h5-202ENSMUST00000100955 879 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Krtap4-9-201ENSMUST00000105059 1059 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Rtn2-202ENSMUST00000108468 1076 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Gm13549-201ENSMUST00000118339 796 ntBASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Gm15764-201ENSMUST00000150389 672 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 4930405O22Rik-201ENSMUST00000164605 954 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Gm8815-201ENSMUST00000173809 620 ntBASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 9330179D12Rik-201ENSMUST00000180569 1105 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Iqcf3-202ENSMUST00000186668 633 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Gm37229-201ENSMUST00000191643 732 ntTSL 3 BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 9430078K24Rik-201ENSMUST00000218818 1082 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 AC160028.1-201ENSMUST00000219645 1095 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Gsto1-201ENSMUST00000026050 1182 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Mgp-201ENSMUST00000032342 617 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx2-4Q9EQM3 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Nppa-201ENSMUST00000103230 865 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Uqcc1-202ENSMUST00000109631 1091 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Gm7541-201ENSMUST00000118361 535 ntBASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Mfsd11-212ENSMUST00000153084 1194 ntTSL 5 BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Gm7137-201ENSMUST00000180161 711 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Gm7972-202ENSMUST00000208453 505 ntTSL 3 BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 CT030653.1-201ENSMUST00000224382 1279 ntBASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Nat8f6-201ENSMUST00000087656 925 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Zfp68-201ENSMUST00000063262 2254 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Hspa14-201ENSMUST00000027961 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx2-4Q9EQM3 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
Nkx2-4Q9EQM3 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC12.55□□□□□ -0.4
Nkx2-4Q9EQM3 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC12.55□□□□□ -0.4
Nkx2-4Q9EQM3 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-4Q9EQM3 Gm13910-201ENSMUST00000121752 1428 ntBASIC12.55□□□□□ -0.4
Nkx2-4Q9EQM3 Fam3a-201ENSMUST00000015427 1427 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Nkx2-4Q9EQM3 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-4Q9EQM3 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-4Q9EQM3 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-4Q9EQM3 Adcyap1r1-204ENSMUST00000165857 1491 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Nkx2-4Q9EQM3 Ccdc163-202ENSMUST00000106462 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-4Q9EQM3 Gm21972-201ENSMUST00000135197 776 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
Nkx2-4Q9EQM3 Gm14154-201ENSMUST00000142642 579 ntTSL 3 BASIC12.55□□□□□ -0.4
Nkx2-4Q9EQM3 1810021B22Rik-201ENSMUST00000150364 652 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx2-4Q9EQM3 Gm17798-201ENSMUST00000182282 1035 ntBASIC12.55□□□□□ -0.4
Nkx2-4Q9EQM3 Gm28306-201ENSMUST00000191315 529 ntTSL 5 BASIC12.55□□□□□ -0.4
Nkx2-4Q9EQM3 Gm37458-201ENSMUST00000194055 410 ntBASIC12.55□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 60.1 ms