Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 INTS4P2-202ENST00000614726 2019 ntBASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 EDF1-203ENST00000371649 790 ntTSL 2 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 RN7SL692P-201ENST00000464677 288 ntBASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 AC011495.1-201ENST00000498085 584 ntBASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 GAPDHP40-201ENST00000505218 1006 ntBASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 ENPP7P5-201ENST00000541031 1031 ntBASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 AC120045.2-201ENST00000567334 178 ntBASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 AC105233.6-201ENST00000642093 218 ntBASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 AL596257.1-201ENST00000641463 2694 ntBASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 AC009090.5-201ENST00000624886 2285 ntBASIC14.24□□□□□ -0.13
NUP54Q7Z3B4 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 SLC9A7P1-201ENST00000554295 3311 ntBASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms