Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Cdc40Q9DC48 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Cdc40Q9DC48 Preb-201ENSMUST00000074840 6300 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Cdc40Q9DC48 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Cdc40Q9DC48 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.58
Cdc40Q9DC48 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Cdc40Q9DC48 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Cdc40Q9DC48 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Cdc40Q9DC48 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC11.46□□□□□ -0.58
Cdc40Q9DC48 Nudt18-202ENSMUST00000228554 3619 ntBASIC11.46□□□□□ -0.58
Cdc40Q9DC48 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Cdc40Q9DC48 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Cdc40Q9DC48 Iqsec2-201ENSMUST00000096275 5252 ntAPPRIS P3 TSL 2 BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Retreg1-206ENSMUST00000228306 1430 ntBASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Gm18263-201ENSMUST00000220846 1928 ntBASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Mtf1-202ENSMUST00000106193 7554 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Gm14726-201ENSMUST00000120623 896 ntBASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Gm18615-201ENSMUST00000222919 1031 ntBASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Gpr19-203ENSMUST00000111932 1711 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Gm7049-201ENSMUST00000223520 1712 ntBASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Tmod2-201ENSMUST00000064433 9884 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Gm35040-201ENSMUST00000206829 5094 ntTSL 2 BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Gm37827-201ENSMUST00000194486 1542 ntBASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Gm43677-201ENSMUST00000198098 2378 ntBASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Chd5-201ENSMUST00000005175 9122 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Cdc40Q9DC48 Gm10782-202ENSMUST00000223775 1480 ntBASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Zmynd8-203ENSMUST00000099084 5232 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Sorcs1-201ENSMUST00000072685 4396 ntTSL 5 BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 2900026A02Rik-203ENSMUST00000212276 5864 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Dab2ip-207ENSMUST00000112992 6184 ntTSL 5 BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Gm11531-201ENSMUST00000117614 555 ntBASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Gm9630-201ENSMUST00000178304 885 ntBASIC11.44□□□□□ -0.58
Cdc40Q9DC48 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Gm5597-201ENSMUST00000182353 1193 ntBASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC11.44□□□□□ -0.58
Cdc40Q9DC48 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 42.9 ms