Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Egfr-202ENSMUST00000102884 2943 ntTSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Gm44260-201ENSMUST00000204946 2094 ntBASIC10□□□□□ -0.81
Cdx1P18111 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC10□□□□□ -0.81
Cdx1P18111 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Brat1-202ENSMUST00000100505 3431 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Gm17029-203ENSMUST00000153443 2758 ntTSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Prkcd-205ENSMUST00000112207 2139 ntTSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Grip2-201ENSMUST00000159684 3006 ntAPPRIS ALT2 TSL 5 BASIC10□□□□□ -0.81
Cdx1P18111 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Pde4c-207ENSMUST00000224874 3099 ntAPPRIS ALT2 BASIC10□□□□□ -0.81
Cdx1P18111 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC10□□□□□ -0.81
Cdx1P18111 Gm12742-201ENSMUST00000117326 410 ntBASIC10□□□□□ -0.81
Cdx1P18111 Gm11524-201ENSMUST00000119349 807 ntBASIC10□□□□□ -0.81
Cdx1P18111 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC10□□□□□ -0.81
Cdx1P18111 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC10□□□□□ -0.81
Cdx1P18111 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC10□□□□□ -0.81
Cdx1P18111 Gm27772-201ENSMUST00000184900 187 ntBASIC10□□□□□ -0.81
Cdx1P18111 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC10□□□□□ -0.81
Cdx1P18111 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC10□□□□□ -0.81
Cdx1P18111 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC10□□□□□ -0.81
Cdx1P18111 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Exosc10-202ENSMUST00000076022 2682 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 S100pbp-203ENSMUST00000106059 4084 ntTSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Plcd4-205ENSMUST00000113749 4648 ntAPPRIS ALT2 TSL 5 BASIC10□□□□□ -0.81
Cdx1P18111 Bbs1-201ENSMUST00000053506 5581 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Ccdc63-201ENSMUST00000058960 2299 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 AC154262.2-202ENSMUST00000225158 1331 ntBASIC10□□□□□ -0.81
Cdx1P18111 Plekhb1-205ENSMUST00000107046 2793 ntAPPRIS ALT1 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC10□□□□□ -0.81
Cdx1P18111 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC10□□□□□ -0.81
Cdx1P18111 Sp140-201ENSMUST00000080204 2417 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Gtf2ird2-201ENSMUST00000016086 3482 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Gfra1-209ENSMUST00000169850 3224 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Mecom-202ENSMUST00000108270 5692 ntAPPRIS ALT2 TSL 5 BASIC9.99□□□□□ -0.81
Cdx1P18111 Ddx55-201ENSMUST00000071057 2799 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Slc25a48-201ENSMUST00000021971 3374 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Cxcl12-203ENSMUST00000112871 3132 ntAPPRIS P4 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Tpd52l2-202ENSMUST00000069712 1799 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Itga4-201ENSMUST00000099972 9767 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 4930463O16Rik-201ENSMUST00000020222 2088 ntTSL 2 BASIC9.99□□□□□ -0.81
Cdx1P18111 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Nsd3-206ENSMUST00000142395 10105 ntAPPRIS P2 TSL 5 BASIC9.99□□□□□ -0.81
Cdx1P18111 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Stat3-202ENSMUST00000103114 6042 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC9.99□□□□□ -0.81
Cdx1P18111 Zmiz1-208ENSMUST00000162645 7482 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Ppip5k1-202ENSMUST00000110625 5226 ntAPPRIS ALT2 TSL 5 BASIC9.99□□□□□ -0.81
Cdx1P18111 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC9.99□□□□□ -0.81
Cdx1P18111 Gm11814-201ENSMUST00000119515 929 ntBASIC9.99□□□□□ -0.81
Cdx1P18111 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC9.99□□□□□ -0.81
Cdx1P18111 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC9.99□□□□□ -0.81
Cdx1P18111 Gm27839-201ENSMUST00000184242 106 ntBASIC9.99□□□□□ -0.81
Cdx1P18111 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC9.99□□□□□ -0.81
Cdx1P18111 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC9.99□□□□□ -0.81
Cdx1P18111 Olfr1227-ps1-201ENSMUST00000215627 928 ntBASIC9.99□□□□□ -0.81
Cdx1P18111 Gm18165-201ENSMUST00000217426 928 ntBASIC9.99□□□□□ -0.81
Cdx1P18111 AC192088.1-201ENSMUST00000227561 301 ntBASIC9.99□□□□□ -0.81
Cdx1P18111 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC9.99□□□□□ -0.81
Cdx1P18111 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Gm20425-201ENSMUST00000166836 3028 ntAPPRIS P1 TSL 5 BASIC9.99□□□□□ -0.81
Cdx1P18111 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
Retrieved 100 of 76,532 protein–RNA pairs in 50.1 ms