Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Gm4978-201ENSMUST00000071565 801 ntBASIC14.33□□□□□ -0.12
Rnf180Q3U827 Krtap2-4-201ENSMUST00000074926 828 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Rnf180Q3U827 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf180Q3U827 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf180Q3U827 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf180Q3U827 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC14.33□□□□□ -0.12
Rnf180Q3U827 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Rnf180Q3U827 Gm13871-202ENSMUST00000107319 1324 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf180Q3U827 Gm11757-202ENSMUST00000107321 1324 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf180Q3U827 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf180Q3U827 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf180Q3U827 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf180Q3U827 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf180Q3U827 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Rnf180Q3U827 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC14.33□□□□□ -0.12
Rnf180Q3U827 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf180Q3U827 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf180Q3U827 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf180Q3U827 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf180Q3U827 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC14.33□□□□□ -0.12
Rnf180Q3U827 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf180Q3U827 Gm12159-201ENSMUST00000143869 1447 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Hrct1-201ENSMUST00000095109 1452 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Gm8110-202ENSMUST00000211297 1782 ntTSL 5 BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Gm15774-201ENSMUST00000141810 2176 ntTSL 5 BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Mir453-201ENSMUST00000104732 82 ntBASIC14.32□□□□□ -0.12
Rnf180Q3U827 Nup188-202ENSMUST00000113634 534 ntTSL 2 BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Gm15540-201ENSMUST00000136052 674 ntTSL 2 BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Gm17226-201ENSMUST00000166637 780 ntTSL 3 BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Gm37207-201ENSMUST00000194284 296 ntBASIC14.32□□□□□ -0.12
Rnf180Q3U827 6720482G16Rik-201ENSMUST00000199552 1192 ntBASIC14.32□□□□□ -0.12
Rnf180Q3U827 Kcne3-206ENSMUST00000207995 439 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Gm6518-201ENSMUST00000208450 342 ntBASIC14.32□□□□□ -0.12
Rnf180Q3U827 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Gm2594-201ENSMUST00000214774 742 ntBASIC14.32□□□□□ -0.12
Rnf180Q3U827 AC107752.1-201ENSMUST00000219362 469 ntBASIC14.32□□□□□ -0.12
Rnf180Q3U827 AC169511.1-201ENSMUST00000227639 995 ntBASIC14.32□□□□□ -0.12
Rnf180Q3U827 Mt4-201ENSMUST00000034207 398 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Acyp1-201ENSMUST00000008966 648 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Selenbp2-204ENSMUST00000173849 1323 ntTSL 5 BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Mta1-202ENSMUST00000069690 2697 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Gm21358-201ENSMUST00000191645 1659 ntBASIC14.32□□□□□ -0.12
Rnf180Q3U827 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Olfr582-202ENSMUST00000210119 1787 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rnf180Q3U827 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf180Q3U827 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Rnf180Q3U827 Gm44891-201ENSMUST00000208817 2223 ntBASIC14.31□□□□□ -0.12
Rnf180Q3U827 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf180Q3U827 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf180Q3U827 Gm37324-201ENSMUST00000194500 4504 ntBASIC14.31□□□□□ -0.12
Rnf180Q3U827 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC14.31□□□□□ -0.12
Rnf180Q3U827 Enpp5-201ENSMUST00000024756 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf180Q3U827 Pemt-202ENSMUST00000102692 1003 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf180Q3U827 Gm23912-201ENSMUST00000104687 87 ntBASIC14.31□□□□□ -0.12
Rnf180Q3U827 Gm14616-201ENSMUST00000131690 314 ntTSL 3 BASIC14.31□□□□□ -0.12
Rnf180Q3U827 Gm14798-201ENSMUST00000139695 1189 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf180Q3U827 Mid1-ps1-201ENSMUST00000167967 1248 ntBASIC14.31□□□□□ -0.12
Rnf180Q3U827 Gm8705-201ENSMUST00000180823 812 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf180Q3U827 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf180Q3U827 Gm27211-201ENSMUST00000183507 631 ntTSL 5 BASIC14.31□□□□□ -0.12
Rnf180Q3U827 2310009A05Rik-201ENSMUST00000184126 496 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf180Q3U827 Gm28826-201ENSMUST00000190006 488 ntTSL 2 BASIC14.31□□□□□ -0.12
Rnf180Q3U827 4930509H03Rik-201ENSMUST00000196088 1215 ntBASIC14.31□□□□□ -0.12
Rnf180Q3U827 Ighv1-70-201ENSMUST00000196509 351 ntBASIC14.31□□□□□ -0.12
Rnf180Q3U827 Gm12248-203ENSMUST00000219877 1160 ntAPPRIS P5 TSL 5 BASIC14.31□□□□□ -0.12
Rnf180Q3U827 Krtap19-5-201ENSMUST00000053460 483 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Rnf180Q3U827 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf180Q3U827 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC14.31□□□□□ -0.12
Rnf180Q3U827 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf180Q3U827 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC14.31□□□□□ -0.12
Rnf180Q3U827 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf180Q3U827 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Rnf180Q3U827 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf180Q3U827 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf180Q3U827 Gm29340-201ENSMUST00000188763 3854 ntBASIC14.31□□□□□ -0.12
Rnf180Q3U827 Coro6-202ENSMUST00000052515 1476 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf180Q3U827 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Rnf180Q3U827 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Rnf180Q3U827 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 76.3 ms