Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A1P12109 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
COL6A1P12109 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC16.84■□□□□ 0.29
COL6A1P12109 RPL18P13-201ENST00000478088 569 ntBASIC16.84■□□□□ 0.29
COL6A1P12109 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A1P12109 HNRNPA1P36-201ENST00000521313 955 ntBASIC16.84■□□□□ 0.29
COL6A1P12109 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC16.84■□□□□ 0.29
COL6A1P12109 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A1P12109 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC16.84■□□□□ 0.29
COL6A1P12109 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
COL6A1P12109 MIR4683-201ENST00000579659 81 ntBASIC16.84■□□□□ 0.29
COL6A1P12109 AC004466.1-201ENST00000599515 1080 ntBASIC16.84■□□□□ 0.29
COL6A1P12109 GMFG-209ENST00000600322 622 ntTSL 5 BASIC16.84■□□□□ 0.29
COL6A1P12109 AL358472.3-201ENST00000608147 415 ntBASIC16.84■□□□□ 0.29
COL6A1P12109 AC009084.3-201ENST00000623356 437 ntBASIC16.84■□□□□ 0.29
COL6A1P12109 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC16.84■□□□□ 0.29
COL6A1P12109 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
COL6A1P12109 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A1P12109 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A1P12109 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A1P12109 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A1P12109 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A1P12109 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC16.84■□□□□ 0.29
COL6A1P12109 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A1P12109 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC16.83■□□□□ 0.29
COL6A1P12109 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
COL6A1P12109 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
COL6A1P12109 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
COL6A1P12109 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
COL6A1P12109 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
COL6A1P12109 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A1P12109 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A1P12109 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A1P12109 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A1P12109 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A1P12109 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
COL6A1P12109 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
COL6A1P12109 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A1P12109 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC16.83■□□□□ 0.28
COL6A1P12109 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
COL6A1P12109 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A1P12109 AC090857.1-201ENST00000527400 390 ntBASIC16.83■□□□□ 0.28
COL6A1P12109 AP000593.2-201ENST00000542775 1433 ntBASIC16.83■□□□□ 0.28
COL6A1P12109 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC16.83■□□□□ 0.28
COL6A1P12109 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC16.83■□□□□ 0.28
COL6A1P12109 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC16.83■□□□□ 0.28
COL6A1P12109 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC16.83■□□□□ 0.28
COL6A1P12109 TBC1D3J-201ENST00000620719 1426 ntBASIC16.83■□□□□ 0.28
COL6A1P12109 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC16.83■□□□□ 0.28
COL6A1P12109 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.83■□□□□ 0.28
COL6A1P12109 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A1P12109 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.83■□□□□ 0.28
COL6A1P12109 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
COL6A1P12109 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.83■□□□□ 0.28
COL6A1P12109 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
COL6A1P12109 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
COL6A1P12109 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
COL6A1P12109 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A1P12109 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A1P12109 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A1P12109 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A1P12109 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A1P12109 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
COL6A1P12109 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A1P12109 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A1P12109 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A1P12109 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.82■□□□□ 0.28
COL6A1P12109 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A1P12109 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.82■□□□□ 0.28
COL6A1P12109 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A1P12109 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A1P12109 CYP51A1P3-201ENST00000400072 1428 ntBASIC16.82■□□□□ 0.28
COL6A1P12109 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
COL6A1P12109 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A1P12109 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC16.82■□□□□ 0.28
COL6A1P12109 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
COL6A1P12109 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A1P12109 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
COL6A1P12109 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC16.82■□□□□ 0.28
COL6A1P12109 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
COL6A1P12109 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A1P12109 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC16.82■□□□□ 0.28
COL6A1P12109 AC009779.1-201ENST00000551138 283 ntBASIC16.82■□□□□ 0.28
COL6A1P12109 AC100827.2-201ENST00000563214 1194 ntBASIC16.82■□□□□ 0.28
COL6A1P12109 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC16.82■□□□□ 0.28
COL6A1P12109 IRF3-215ENST00000596822 823 ntTSL 3 BASIC16.82■□□□□ 0.28
COL6A1P12109 AC103810.10-201ENST00000606504 343 ntBASIC16.82■□□□□ 0.28
COL6A1P12109 NAP1L6-202ENST00000641404 1222 ntBASIC16.82■□□□□ 0.28
COL6A1P12109 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A1P12109 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A1P12109 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.82■□□□□ 0.28
COL6A1P12109 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
COL6A1P12109 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
COL6A1P12109 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A1P12109 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
COL6A1P12109 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A1P12109 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A1P12109 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
COL6A1P12109 AC069224.1-201ENST00000566372 1715 ntBASIC16.82■□□□□ 0.28
COL6A1P12109 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms