Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MSH4O15457 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSH4O15457 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSH4O15457 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSH4O15457 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSH4O15457 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSH4O15457 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
MSH4O15457 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MSH4O15457 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MSH4O15457 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
MSH4O15457 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSH4O15457 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC17.25■□□□□ 0.35
MSH4O15457 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC17.24■□□□□ 0.35
MSH4O15457 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSH4O15457 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSH4O15457 SLC9A7P1-201ENST00000554295 3311 ntBASIC17.24■□□□□ 0.35
MSH4O15457 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
MSH4O15457 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC17.24■□□□□ 0.35
MSH4O15457 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
MSH4O15457 AC126177.1-201ENST00000547829 2218 ntBASIC17.24■□□□□ 0.35
MSH4O15457 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSH4O15457 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC17.24■□□□□ 0.35
MSH4O15457 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSH4O15457 AC091951.1-201ENST00000512854 2465 ntBASIC17.24■□□□□ 0.35
MSH4O15457 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSH4O15457 AL138709.1-201ENST00000614840 1693 ntBASIC17.24■□□□□ 0.35
MSH4O15457 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MSH4O15457 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSH4O15457 RPS15-201ENST00000233609 534 ntTSL 2 BASIC17.24■□□□□ 0.35
MSH4O15457 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSH4O15457 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
MSH4O15457 ANKRD19P-201ENST00000338192 862 ntBASIC17.24■□□□□ 0.35
MSH4O15457 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSH4O15457 B9D1-203ENST00000395615 805 ntTSL 3 BASIC17.24■□□□□ 0.35
MSH4O15457 MIR1909-201ENST00000411312 80 ntBASIC17.24■□□□□ 0.35
MSH4O15457 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MSH4O15457 KRT43P-201ENST00000434019 910 ntBASIC17.24■□□□□ 0.35
MSH4O15457 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC17.24■□□□□ 0.35
MSH4O15457 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC17.24■□□□□ 0.35
MSH4O15457 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
MSH4O15457 NOP2-220ENST00000545915 630 ntTSL 2 BASIC17.24■□□□□ 0.35
MSH4O15457 RPS15-205ENST00000586686 562 ntTSL 5 BASIC17.24■□□□□ 0.35
MSH4O15457 RPS15-208ENST00000591804 711 ntTSL 5 BASIC17.24■□□□□ 0.35
MSH4O15457 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSH4O15457 AC244669.2-201ENST00000612320 853 ntBASIC17.24■□□□□ 0.35
MSH4O15457 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC17.24■□□□□ 0.35
MSH4O15457 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
MSH4O15457 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSH4O15457 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC17.24■□□□□ 0.35
MSH4O15457 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC17.24■□□□□ 0.35
MSH4O15457 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
MSH4O15457 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSH4O15457 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MSH4O15457 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSH4O15457 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC17.24■□□□□ 0.35
MSH4O15457 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
MSH4O15457 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC17.24■□□□□ 0.35
MSH4O15457 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
MSH4O15457 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC17.24■□□□□ 0.35
MSH4O15457 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH4O15457 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH4O15457 AC006486.2-201ENST00000624246 2199 ntBASIC17.23■□□□□ 0.35
MSH4O15457 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH4O15457 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
MSH4O15457 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH4O15457 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH4O15457 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
MSH4O15457 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
MSH4O15457 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH4O15457 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH4O15457 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC17.23■□□□□ 0.35
MSH4O15457 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH4O15457 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH4O15457 PDIA3P1-201ENST00000471856 1510 ntBASIC17.23■□□□□ 0.35
MSH4O15457 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
MSH4O15457 AC046158.3-201ENST00000624947 2558 ntBASIC17.23■□□□□ 0.35
MSH4O15457 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH4O15457 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH4O15457 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MSH4O15457 LBX2-201ENST00000341396 886 ntTSL 3 BASIC17.23■□□□□ 0.35
MSH4O15457 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
MSH4O15457 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC17.23■□□□□ 0.35
MSH4O15457 EIF3FP3-201ENST00000434851 1086 ntBASIC17.23■□□□□ 0.35
MSH4O15457 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH4O15457 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC17.23■□□□□ 0.35
MSH4O15457 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC17.23■□□□□ 0.35
MSH4O15457 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC17.23■□□□□ 0.35
MSH4O15457 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC17.23■□□□□ 0.35
MSH4O15457 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC17.23■□□□□ 0.35
MSH4O15457 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
MSH4O15457 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC17.23■□□□□ 0.35
MSH4O15457 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC17.23■□□□□ 0.35
MSH4O15457 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH4O15457 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MSH4O15457 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH4O15457 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH4O15457 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH4O15457 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH4O15457 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC17.23■□□□□ 0.35
MSH4O15457 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms