Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
KRT39Q6A163 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
KRT39Q6A163 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
KRT39Q6A163 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
KRT39Q6A163 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
KRT39Q6A163 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
KRT39Q6A163 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
KRT39Q6A163 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
KRT39Q6A163 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
KRT39Q6A163 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
KRT39Q6A163 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
KRT39Q6A163 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.68■□□□□ 0.26
KRT39Q6A163 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
KRT39Q6A163 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC16.68■□□□□ 0.26
KRT39Q6A163 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC16.68■□□□□ 0.26
KRT39Q6A163 AC104596.2-201ENST00000512793 793 ntBASIC16.68■□□□□ 0.26
KRT39Q6A163 AC026410.3-201ENST00000514280 936 ntBASIC16.68■□□□□ 0.26
KRT39Q6A163 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC16.68■□□□□ 0.26
KRT39Q6A163 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC16.68■□□□□ 0.26
KRT39Q6A163 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC16.68■□□□□ 0.26
KRT39Q6A163 MIR4745-201ENST00000577608 62 ntBASIC16.68■□□□□ 0.26
KRT39Q6A163 BRI3BPP1-201ENST00000594224 787 ntBASIC16.68■□□□□ 0.26
KRT39Q6A163 AC093726.1-201ENST00000608064 963 ntBASIC16.68■□□□□ 0.26
KRT39Q6A163 NID2-208ENST00000617139 3827 ntTSL 5 BASIC16.68■□□□□ 0.26
KRT39Q6A163 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
KRT39Q6A163 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.68■□□□□ 0.26
KRT39Q6A163 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
KRT39Q6A163 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
KRT39Q6A163 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
KRT39Q6A163 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
KRT39Q6A163 FLJ16779-201ENST00000612722 7638 ntBASIC16.68■□□□□ 0.26
KRT39Q6A163 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
KRT39Q6A163 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
KRT39Q6A163 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
KRT39Q6A163 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC16.68■□□□□ 0.26
KRT39Q6A163 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
KRT39Q6A163 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
KRT39Q6A163 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC16.67■□□□□ 0.26
KRT39Q6A163 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC16.67■□□□□ 0.26
KRT39Q6A163 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
KRT39Q6A163 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
KRT39Q6A163 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
KRT39Q6A163 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
KRT39Q6A163 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
KRT39Q6A163 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
KRT39Q6A163 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
KRT39Q6A163 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
KRT39Q6A163 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC16.67■□□□□ 0.26
KRT39Q6A163 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
KRT39Q6A163 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC16.67■□□□□ 0.26
KRT39Q6A163 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
KRT39Q6A163 AC087499.6-201ENST00000411576 835 ntBASIC16.67■□□□□ 0.26
KRT39Q6A163 AL353779.1-201ENST00000434793 351 ntBASIC16.67■□□□□ 0.26
KRT39Q6A163 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC16.67■□□□□ 0.26
KRT39Q6A163 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
KRT39Q6A163 VDAC1P7-201ENST00000462417 847 ntBASIC16.67■□□□□ 0.26
KRT39Q6A163 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
KRT39Q6A163 OARD1-208ENST00000469104 704 ntTSL 2 BASIC16.67■□□□□ 0.26
KRT39Q6A163 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC16.67■□□□□ 0.26
KRT39Q6A163 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC16.67■□□□□ 0.26
KRT39Q6A163 SAMD11P1-201ENST00000571429 661 ntBASIC16.67■□□□□ 0.26
KRT39Q6A163 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC16.67■□□□□ 0.26
KRT39Q6A163 MIR8072-201ENST00000614241 80 ntBASIC16.67■□□□□ 0.26
KRT39Q6A163 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC16.67■□□□□ 0.26
KRT39Q6A163 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC16.67■□□□□ 0.26
KRT39Q6A163 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC16.67■□□□□ 0.26
KRT39Q6A163 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
KRT39Q6A163 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
KRT39Q6A163 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
KRT39Q6A163 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
KRT39Q6A163 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
KRT39Q6A163 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
KRT39Q6A163 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.67■□□□□ 0.26
KRT39Q6A163 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
KRT39Q6A163 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
KRT39Q6A163 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC16.67■□□□□ 0.26
KRT39Q6A163 AC012508.2-201ENST00000567613 1472 ntBASIC16.67■□□□□ 0.26
KRT39Q6A163 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC16.67■□□□□ 0.26
KRT39Q6A163 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
KRT39Q6A163 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
KRT39Q6A163 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC16.66■□□□□ 0.26
KRT39Q6A163 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
KRT39Q6A163 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
KRT39Q6A163 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
KRT39Q6A163 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
KRT39Q6A163 REXO1L4P-201ENST00000605109 1937 ntBASIC16.66■□□□□ 0.26
KRT39Q6A163 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
KRT39Q6A163 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
KRT39Q6A163 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
KRT39Q6A163 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
KRT39Q6A163 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.66■□□□□ 0.26
KRT39Q6A163 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
KRT39Q6A163 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
KRT39Q6A163 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
KRT39Q6A163 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC16.66■□□□□ 0.26
KRT39Q6A163 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
KRT39Q6A163 AP000845.1-201ENST00000581677 2131 ntBASIC16.66■□□□□ 0.26
KRT39Q6A163 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC16.66■□□□□ 0.26
KRT39Q6A163 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
KRT39Q6A163 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms