Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Rnf220Q6PDX6 Pbx1-208ENSMUST00000188912 3970 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Rnf220Q6PDX6 Gm19792-201ENSMUST00000222522 2021 ntTSL 5 BASIC11.76□□□□□ -0.53
Rnf220Q6PDX6 Prok1-202ENSMUST00000197758 3063 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Sptbn2-201ENSMUST00000008991 8251 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Atp1a3-201ENSMUST00000080882 3621 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Gm10652-201ENSMUST00000199790 2622 ntBASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Coa5-201ENSMUST00000027286 3863 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Pcdhgc4-201ENSMUST00000066140 5024 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Arhgap29-201ENSMUST00000037958 5787 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Wdr43-201ENSMUST00000047086 3450 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Muc13-201ENSMUST00000023520 2942 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 A1cf-202ENSMUST00000224304 2968 ntAPPRIS ALT1 BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Srrt-201ENSMUST00000040873 3024 ntAPPRIS P3 TSL 5 BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Gm5279-201ENSMUST00000199575 745 ntBASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 AC139382.1-201ENSMUST00000221402 498 ntBASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Gm20445-201ENSMUST00000061905 565 ntBASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Cul9-204ENSMUST00000182485 7848 ntAPPRIS P2 TSL 5 BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 CT009713.10-201ENSMUST00000225013 1986 ntBASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Gm29100-201ENSMUST00000187564 4410 ntBASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Zswim9-203ENSMUST00000119558 3111 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Lsg1-201ENSMUST00000117363 3180 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Maob-201ENSMUST00000040820 2411 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC11.75□□□□□ -0.53
Rnf220Q6PDX6 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Acvrl1-201ENSMUST00000000542 3640 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Gm42913-201ENSMUST00000197936 1853 ntBASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Ntng2-202ENSMUST00000071201 1881 ntTSL 5 BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Cd6-203ENSMUST00000080292 3032 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 LMLN2-201ENSMUST00000224691 2342 ntAPPRIS P5 BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Trmt44-201ENSMUST00000030980 3790 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Pip4k2b-201ENSMUST00000018691 5053 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Gm26464-201ENSMUST00000157094 305 ntBASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Mir7684-201ENSMUST00000183858 60 ntBASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Gm27838-201ENSMUST00000184829 128 ntBASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Gm19078-201ENSMUST00000206311 727 ntBASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Herc4-201ENSMUST00000020258 3898 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Ccdc62-201ENSMUST00000094320 3924 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 L3mbtl1-201ENSMUST00000035751 2724 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Ddx54-201ENSMUST00000031598 4322 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Chl1-204ENSMUST00000203912 4628 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Wdr33-201ENSMUST00000025264 6206 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Vrtn-203ENSMUST00000167227 3440 ntAPPRIS P1 TSL 3 BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Als2cl-206ENSMUST00000155014 5150 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Gm21103-202ENSMUST00000170923 1761 ntAPPRIS P5 TSL 5 BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Sec14l1-202ENSMUST00000090433 4654 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Pcdhga4-201ENSMUST00000194418 4727 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Csk-204ENSMUST00000215396 2390 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC11.74□□□□□ -0.53
Rnf220Q6PDX6 Nckap5-212ENSMUST00000162877 2630 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Rnf220Q6PDX6 Gm8378-202ENSMUST00000167777 2624 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Rnf220Q6PDX6 Banp-204ENSMUST00000170857 5444 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Rnf220Q6PDX6 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Rnf220Q6PDX6 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC11.73□□□□□ -0.53
Rnf220Q6PDX6 Dglucy-202ENSMUST00000110069 3058 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Rnf220Q6PDX6 Gm14698-201ENSMUST00000096420 4226 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Rnf220Q6PDX6 Mfrp-201ENSMUST00000034654 4316 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Rnf220Q6PDX6 Gm37422-201ENSMUST00000193794 4718 ntBASIC11.73□□□□□ -0.53
Rnf220Q6PDX6 Plin4-201ENSMUST00000002908 5755 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Rnf220Q6PDX6 Esr2-202ENSMUST00000101291 3362 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Rnf220Q6PDX6 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Rnf220Q6PDX6 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Rnf220Q6PDX6 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Rnf220Q6PDX6 Brd1-202ENSMUST00000109380 3259 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms