Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lsm1Q8VC85 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lsm1Q8VC85 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lsm1Q8VC85 Rnf43-203ENSMUST00000121782 2640 ntTSL 5 BASIC11.93□□□□□ -0.5
Lsm1Q8VC85 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lsm1Q8VC85 Zscan30-202ENSMUST00000224144 1458 ntBASIC11.93□□□□□ -0.5
Lsm1Q8VC85 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lsm1Q8VC85 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Lsm1Q8VC85 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lsm1Q8VC85 Gm15567-201ENSMUST00000148699 2130 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Lsm1Q8VC85 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Lsm1Q8VC85 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Lsm1Q8VC85 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lsm1Q8VC85 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC11.93□□□□□ -0.5
Lsm1Q8VC85 Gm7789-202ENSMUST00000211273 1400 ntBASIC11.93□□□□□ -0.5
Lsm1Q8VC85 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC11.93□□□□□ -0.5
Lsm1Q8VC85 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lsm1Q8VC85 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lsm1Q8VC85 Wfs1-201ENSMUST00000043964 3787 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lsm1Q8VC85 Ap1g2-201ENSMUST00000036041 2673 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lsm1Q8VC85 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lsm1Q8VC85 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Lsm1Q8VC85 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 2010315B03Rik-202ENSMUST00000177714 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Gm37014-201ENSMUST00000194723 2253 ntBASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Gm8706-201ENSMUST00000197372 1491 ntBASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Gm13315-201ENSMUST00000120376 991 ntBASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Gm8018-201ENSMUST00000173536 789 ntBASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Gm44882-201ENSMUST00000205702 802 ntBASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Scamp5-201ENSMUST00000046587 3225 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Lsm1Q8VC85 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Arid4a-201ENSMUST00000046305 4998 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Tmem181a-201ENSMUST00000088940 4405 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Gm9361-201ENSMUST00000198695 1507 ntBASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Gm3287-205ENSMUST00000228893 1332 ntBASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 C230014O12Rik-201ENSMUST00000134921 2668 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Gm1335-201ENSMUST00000121653 386 ntBASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Lsm1Q8VC85 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC11.91□□□□□ -0.5
Lsm1Q8VC85 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms