Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Usp40Q8BWR4 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Usp40Q8BWR4 Gm45266-201ENSMUST00000210111 2173 ntBASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Mir680-2-201ENSMUST00000102163 110 ntBASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Gm23251-201ENSMUST00000103773 110 ntBASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Gm26286-201ENSMUST00000104166 134 ntBASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Gm12165-201ENSMUST00000117047 342 ntBASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Tbc1d22bos-201ENSMUST00000159875 826 ntTSL 3 BASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Gm3332-201ENSMUST00000189337 928 ntBASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC16.96■□□□□ 0.31
Usp40Q8BWR4 CT009718.3-201ENSMUST00000221116 367 ntBASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Gm807-202ENSMUST00000224929 408 ntBASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Ntng1-201ENSMUST00000051253 327 ntBASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Lcn6-201ENSMUST00000059693 1254 ntTSL 5 BASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Gm6580-201ENSMUST00000117504 1357 ntBASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Gm43081-201ENSMUST00000199082 1380 ntBASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Gm18782-201ENSMUST00000209023 1399 ntBASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Usp40Q8BWR4 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
Usp40Q8BWR4 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Gm7851-201ENSMUST00000117574 323 ntBASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Gm12501-201ENSMUST00000119163 529 ntBASIC16.95■□□□□ 0.3
Usp40Q8BWR4 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Gm16172-201ENSMUST00000156224 682 ntTSL 3 BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Gm18393-201ENSMUST00000208349 1131 ntBASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 AC159819.2-201ENSMUST00000216151 342 ntBASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Usp40Q8BWR4 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Ntrk2-209ENSMUST00000225950 2640 ntBASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Gm11941-201ENSMUST00000119904 610 ntBASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Gm37246-201ENSMUST00000192665 835 ntBASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Gm43184-201ENSMUST00000197247 542 ntBASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Gm42682-201ENSMUST00000198349 1265 ntBASIC16.94■□□□□ 0.3
Usp40Q8BWR4 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Gm4482-201ENSMUST00000200876 742 ntBASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Csrp2-203ENSMUST00000219502 544 ntTSL 3 BASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Usp40Q8BWR4 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC16.94■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 76.2 ms