Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Gm39317-201ENSMUST00000213360 1138 ntTSL 5 BASIC12.68□□□□□ -0.38
Sox1P53783 Gm17749-201ENSMUST00000216282 690 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Sox1P53783 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC12.68□□□□□ -0.38
Sox1P53783 AC113282.2-201ENSMUST00000224012 945 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Sox1P53783 AC113282.3-201ENSMUST00000224757 942 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Sox1P53783 Sapcd1-201ENSMUST00000040151 935 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox1P53783 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox1P53783 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox1P53783 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC12.68□□□□□ -0.38
Sox1P53783 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox1P53783 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox1P53783 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox1P53783 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox1P53783 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sox1P53783 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC12.68□□□□□ -0.38
Sox1P53783 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Sox1P53783 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox1P53783 Tmem237-205ENSMUST00000186794 1533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox1P53783 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC12.67□□□□□ -0.38
Sox1P53783 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox1P53783 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox1P53783 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox1P53783 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox1P53783 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox1P53783 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox1P53783 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC12.67□□□□□ -0.38
Sox1P53783 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox1P53783 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox1P53783 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox1P53783 Gm28719-201ENSMUST00000187779 1757 ntBASIC12.67□□□□□ -0.38
Sox1P53783 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox1P53783 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox1P53783 Gm15566-201ENSMUST00000121130 590 ntBASIC12.67□□□□□ -0.38
Sox1P53783 Smim1-204ENSMUST00000130175 477 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Sox1P53783 AC158605.1-201ENSMUST00000156803 764 ntTSL 3 BASIC12.67□□□□□ -0.38
Sox1P53783 Rprl1-201ENSMUST00000158050 327 ntBASIC12.67□□□□□ -0.38
Sox1P53783 Fxyd5-203ENSMUST00000159924 805 ntAPPRIS P3 TSL 5 BASIC12.67□□□□□ -0.38
Sox1P53783 Fxyd5-210ENSMUST00000162116 817 ntAPPRIS P3 TSL 5 BASIC12.67□□□□□ -0.38
Sox1P53783 Gm8451-201ENSMUST00000170338 447 ntBASIC12.67□□□□□ -0.38
Sox1P53783 4930562C15Rik-202ENSMUST00000171105 1299 ntTSL 2 BASIC12.67□□□□□ -0.38
Sox1P53783 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Sox1P53783 Mir6941-201ENSMUST00000184711 59 ntBASIC12.67□□□□□ -0.38
Sox1P53783 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC12.67□□□□□ -0.38
Sox1P53783 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Sox1P53783 Rps12-208ENSMUST00000220070 494 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox1P53783 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC12.67□□□□□ -0.38
Sox1P53783 CT573086.4-201ENSMUST00000226729 342 ntBASIC12.67□□□□□ -0.38
Sox1P53783 Gm7536-201ENSMUST00000077389 444 ntBASIC12.67□□□□□ -0.38
Sox1P53783 Gm5453-201ENSMUST00000080866 447 ntBASIC12.67□□□□□ -0.38
Sox1P53783 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Sox1P53783 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Sox1P53783 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Sox1P53783 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Sox1P53783 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox1P53783 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Sox1P53783 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Sox1P53783 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox1P53783 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Sox1P53783 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Sox1P53783 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC12.67□□□□□ -0.38
Sox1P53783 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sox1P53783 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Sox1P53783 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
Sox1P53783 Fam114a2-202ENSMUST00000108850 1765 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sox1P53783 Chac2-202ENSMUST00000101394 1315 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sox1P53783 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sox1P53783 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC12.66□□□□□ -0.38
Sox1P53783 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC12.66□□□□□ -0.38
Sox1P53783 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Sox1P53783 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sox1P53783 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Sox1P53783 Gm14921-201ENSMUST00000118643 908 ntBASIC12.66□□□□□ -0.38
Sox1P53783 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Sox1P53783 Gm5555-201ENSMUST00000120352 1111 ntBASIC12.66□□□□□ -0.38
Sox1P53783 Nudt7-204ENSMUST00000134593 707 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sox1P53783 2610005L07Rik-201ENSMUST00000139264 948 ntBASIC12.66□□□□□ -0.38
Sox1P53783 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC12.66□□□□□ -0.38
Sox1P53783 Gm21092-201ENSMUST00000178995 955 ntBASIC12.66□□□□□ -0.38
Sox1P53783 Gm9135-201ENSMUST00000182963 990 ntBASIC12.66□□□□□ -0.38
Sox1P53783 Gm44421-201ENSMUST00000205064 1221 ntBASIC12.66□□□□□ -0.38
Sox1P53783 Gm5599-201ENSMUST00000209602 788 ntBASIC12.66□□□□□ -0.38
Sox1P53783 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC12.66□□□□□ -0.38
Sox1P53783 AC129308.3-201ENSMUST00000225652 524 ntBASIC12.66□□□□□ -0.38
Sox1P53783 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Sox1P53783 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sox1P53783 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sox1P53783 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sox1P53783 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC12.66□□□□□ -0.38
Sox1P53783 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sox1P53783 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Sox1P53783 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Sox1P53783 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Sox1P53783 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Sox1P53783 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sox1P53783 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sox1P53783 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC12.66□□□□□ -0.38
Sox1P53783 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Sox1P53783 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sox1P53783 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sox1P53783 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms