Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC13.82□□□□□ -0.2
Trim47Q8C0E3 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Trim47Q8C0E3 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim47Q8C0E3 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim47Q8C0E3 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Trim47Q8C0E3 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Trim47Q8C0E3 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim47Q8C0E3 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Gm9083-201ENSMUST00000120423 819 ntBASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Gm23119-201ENSMUST00000158610 140 ntBASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Gm5070-201ENSMUST00000177599 862 ntBASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Gm4819-201ENSMUST00000182170 1009 ntBASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC13.81□□□□□ -0.2
Trim47Q8C0E3 D530018E20Rik-201ENSMUST00000205107 958 ntBASIC13.81□□□□□ -0.2
Trim47Q8C0E3 AC161537.1-201ENSMUST00000226199 1015 ntBASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 AC122197.2-201ENSMUST00000219196 1635 ntBASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Ncor2-205ENSMUST00000111398 8808 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 AC154849.3-201ENSMUST00000223733 1660 ntBASIC13.81□□□□□ -0.2
Trim47Q8C0E3 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim47Q8C0E3 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Cdk5rap1-202ENSMUST00000109730 1227 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Gm4760-201ENSMUST00000119663 1030 ntBASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Gm2420-201ENSMUST00000119864 2149 ntBASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Gm15276-201ENSMUST00000145953 498 ntBASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Gm28745-201ENSMUST00000190069 305 ntBASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 AC153961.1-201ENSMUST00000217760 385 ntBASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 AC126253.1-202ENSMUST00000226732 835 ntBASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Gm13142-201ENSMUST00000117213 1453 ntBASIC13.8□□□□□ -0.2
Trim47Q8C0E3 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim47Q8C0E3 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Trim47Q8C0E3 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Trim47Q8C0E3 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC13.79□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 42.4 ms