Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim3Q9R1R2 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Trim3Q9R1R2 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim3Q9R1R2 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trim3Q9R1R2 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trim3Q9R1R2 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trim3Q9R1R2 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trim3Q9R1R2 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trim3Q9R1R2 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Trim3Q9R1R2 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim3Q9R1R2 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim3Q9R1R2 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim3Q9R1R2 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim3Q9R1R2 Nsd1-206ENSMUST00000224918 1001 ntBASIC19.55■□□□□ 0.72
Trim3Q9R1R2 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim3Q9R1R2 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
Trim3Q9R1R2 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim3Q9R1R2 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Trim3Q9R1R2 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim3Q9R1R2 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Trim3Q9R1R2 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Trim3Q9R1R2 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim3Q9R1R2 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Trim3Q9R1R2 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim3Q9R1R2 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Trim3Q9R1R2 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim3Q9R1R2 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim3Q9R1R2 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC19.53■□□□□ 0.72
Trim3Q9R1R2 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Trim3Q9R1R2 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trim3Q9R1R2 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trim3Q9R1R2 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Trim3Q9R1R2 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC19.52■□□□□ 0.72
Trim3Q9R1R2 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC19.52■□□□□ 0.72
Trim3Q9R1R2 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Trim3Q9R1R2 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trim3Q9R1R2 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Trim3Q9R1R2 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC19.51■□□□□ 0.71
Trim3Q9R1R2 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Trim3Q9R1R2 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
Trim3Q9R1R2 Gm37415-201ENSMUST00000192265 2054 ntBASIC19.5■□□□□ 0.71
Trim3Q9R1R2 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim3Q9R1R2 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim3Q9R1R2 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Trim3Q9R1R2 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim3Q9R1R2 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
Trim3Q9R1R2 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Trim3Q9R1R2 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Trim3Q9R1R2 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim3Q9R1R2 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC19.49■□□□□ 0.71
Trim3Q9R1R2 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim3Q9R1R2 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC19.49■□□□□ 0.71
Trim3Q9R1R2 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC19.49■□□□□ 0.71
Trim3Q9R1R2 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
Trim3Q9R1R2 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim3Q9R1R2 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Trim3Q9R1R2 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim3Q9R1R2 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
Trim3Q9R1R2 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Trim3Q9R1R2 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim3Q9R1R2 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Trim3Q9R1R2 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim3Q9R1R2 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim3Q9R1R2 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim3Q9R1R2 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim3Q9R1R2 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim3Q9R1R2 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim3Q9R1R2 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Trim3Q9R1R2 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
Trim3Q9R1R2 Gm15820-201ENSMUST00000201566 728 ntBASIC19.48■□□□□ 0.71
Trim3Q9R1R2 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC19.48■□□□□ 0.71
Trim3Q9R1R2 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Trim3Q9R1R2 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim3Q9R1R2 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim3Q9R1R2 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim3Q9R1R2 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Trim3Q9R1R2 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Trim3Q9R1R2 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
Trim3Q9R1R2 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim3Q9R1R2 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim3Q9R1R2 Gm42418-201ENSMUST00000182010 1831 ntBASIC19.46■□□□□ 0.71
Trim3Q9R1R2 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim3Q9R1R2 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim3Q9R1R2 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Trim3Q9R1R2 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim3Q9R1R2 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Trim3Q9R1R2 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
Trim3Q9R1R2 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim3Q9R1R2 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC19.45■□□□□ 0.7
Trim3Q9R1R2 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim3Q9R1R2 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim3Q9R1R2 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Trim3Q9R1R2 Gm18755-201ENSMUST00000218030 1099 ntBASIC19.45■□□□□ 0.7
Trim3Q9R1R2 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC19.45■□□□□ 0.7
Trim3Q9R1R2 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim3Q9R1R2 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim3Q9R1R2 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC19.45■□□□□ 0.7
Trim3Q9R1R2 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim3Q9R1R2 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC19.44■□□□□ 0.7
Trim3Q9R1R2 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 55.5 ms