Protein–RNA interactions for Protein: Q9QXN0

Shroom3, Protein Shroom3, mousemouse

Predictions only

Length 1,986 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shroom3Q9QXN0 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Shroom3Q9QXN0 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Shroom3Q9QXN0 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
Shroom3Q9QXN0 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Shroom3Q9QXN0 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Shroom3Q9QXN0 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Shroom3Q9QXN0 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Shroom3Q9QXN0 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
Shroom3Q9QXN0 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Shroom3Q9QXN0 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Shroom3Q9QXN0 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Shroom3Q9QXN0 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC21.08■□□□□ 0.96
Shroom3Q9QXN0 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC21.08■□□□□ 0.96
Shroom3Q9QXN0 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
Shroom3Q9QXN0 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Shroom3Q9QXN0 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC21.07■□□□□ 0.96
Shroom3Q9QXN0 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Shroom3Q9QXN0 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Shroom3Q9QXN0 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Shroom3Q9QXN0 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Shroom3Q9QXN0 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Shroom3Q9QXN0 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Shroom3Q9QXN0 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Shroom3Q9QXN0 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Shroom3Q9QXN0 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Shroom3Q9QXN0 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC21.05■□□□□ 0.96
Shroom3Q9QXN0 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC21.05■□□□□ 0.96
Shroom3Q9QXN0 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Shroom3Q9QXN0 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Shroom3Q9QXN0 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
Shroom3Q9QXN0 Gm21956-201ENSMUST00000179946 522 ntBASIC21.05■□□□□ 0.96
Shroom3Q9QXN0 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Shroom3Q9QXN0 Gm12504-201ENSMUST00000120860 2231 ntBASIC21.05■□□□□ 0.96
Shroom3Q9QXN0 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Shroom3Q9QXN0 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Shroom3Q9QXN0 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Shroom3Q9QXN0 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Shroom3Q9QXN0 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Shroom3Q9QXN0 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC21.03■□□□□ 0.96
Shroom3Q9QXN0 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC21.03■□□□□ 0.96
Shroom3Q9QXN0 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Shroom3Q9QXN0 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Shroom3Q9QXN0 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Shroom3Q9QXN0 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Shroom3Q9QXN0 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Shroom3Q9QXN0 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Shroom3Q9QXN0 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Shroom3Q9QXN0 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Shroom3Q9QXN0 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Shroom3Q9QXN0 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Shroom3Q9QXN0 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC21.02■□□□□ 0.96
Shroom3Q9QXN0 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Shroom3Q9QXN0 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Shroom3Q9QXN0 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Shroom3Q9QXN0 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Shroom3Q9QXN0 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
Shroom3Q9QXN0 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Shroom3Q9QXN0 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Shroom3Q9QXN0 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Shroom3Q9QXN0 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC21.01■□□□□ 0.95
Shroom3Q9QXN0 Gm16464-201ENSMUST00000117815 1095 ntBASIC21.01■□□□□ 0.95
Shroom3Q9QXN0 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Shroom3Q9QXN0 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC21.01■□□□□ 0.95
Shroom3Q9QXN0 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC21.01■□□□□ 0.95
Shroom3Q9QXN0 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC21.01■□□□□ 0.95
Shroom3Q9QXN0 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Shroom3Q9QXN0 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC21■□□□□ 0.95
Shroom3Q9QXN0 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Shroom3Q9QXN0 Gm13042-201ENSMUST00000119244 1955 ntBASIC21■□□□□ 0.95
Shroom3Q9QXN0 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
Shroom3Q9QXN0 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Shroom3Q9QXN0 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Shroom3Q9QXN0 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Shroom3Q9QXN0 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Shroom3Q9QXN0 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Shroom3Q9QXN0 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Shroom3Q9QXN0 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Shroom3Q9QXN0 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Shroom3Q9QXN0 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Shroom3Q9QXN0 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Shroom3Q9QXN0 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Shroom3Q9QXN0 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Shroom3Q9QXN0 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC20.99■□□□□ 0.95
Shroom3Q9QXN0 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Shroom3Q9QXN0 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Shroom3Q9QXN0 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Shroom3Q9QXN0 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Shroom3Q9QXN0 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Shroom3Q9QXN0 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Shroom3Q9QXN0 Gm10399-202ENSMUST00000202768 748 ntBASIC20.97■□□□□ 0.95
Shroom3Q9QXN0 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Shroom3Q9QXN0 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Shroom3Q9QXN0 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Shroom3Q9QXN0 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Shroom3Q9QXN0 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Shroom3Q9QXN0 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Shroom3Q9QXN0 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Shroom3Q9QXN0 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Shroom3Q9QXN0 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Shroom3Q9QXN0 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 168.7 ms