Protein–RNA interactions for Protein: Q91Y21

Pcdha1, Protocadherin alpha 1, mousemouse

Predictions only

Length 948 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha1Q91Y21 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Pcdha1Q91Y21 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC21.86■■□□□ 1.09
Pcdha1Q91Y21 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Pcdha1Q91Y21 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Pcdha1Q91Y21 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC21.85■■□□□ 1.09
Pcdha1Q91Y21 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Pcdha1Q91Y21 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC21.85■■□□□ 1.09
Pcdha1Q91Y21 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Pcdha1Q91Y21 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Pcdha1Q91Y21 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Pcdha1Q91Y21 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Pcdha1Q91Y21 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC21.85■■□□□ 1.09
Pcdha1Q91Y21 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Pcdha1Q91Y21 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
Pcdha1Q91Y21 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Pcdha1Q91Y21 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC21.84■■□□□ 1.09
Pcdha1Q91Y21 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Pcdha1Q91Y21 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Pcdha1Q91Y21 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Pcdha1Q91Y21 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
Pcdha1Q91Y21 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Pcdha1Q91Y21 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Pcdha1Q91Y21 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
Pcdha1Q91Y21 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
Pcdha1Q91Y21 Gm13241-201ENSMUST00000094493 780 ntBASIC21.83■■□□□ 1.09
Pcdha1Q91Y21 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Pcdha1Q91Y21 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
Pcdha1Q91Y21 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Pcdha1Q91Y21 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Pcdha1Q91Y21 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Pcdha1Q91Y21 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Pcdha1Q91Y21 Gm9847-201ENSMUST00000052528 599 ntBASIC21.82■■□□□ 1.08
Pcdha1Q91Y21 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC21.82■■□□□ 1.08
Pcdha1Q91Y21 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Pcdha1Q91Y21 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
Pcdha1Q91Y21 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC21.81■■□□□ 1.08
Pcdha1Q91Y21 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
Pcdha1Q91Y21 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC21.81■■□□□ 1.08
Pcdha1Q91Y21 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Pcdha1Q91Y21 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC21.81■■□□□ 1.08
Pcdha1Q91Y21 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Pcdha1Q91Y21 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Pcdha1Q91Y21 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC21.81■■□□□ 1.08
Pcdha1Q91Y21 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
Pcdha1Q91Y21 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
Pcdha1Q91Y21 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
Pcdha1Q91Y21 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Pcdha1Q91Y21 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Pcdha1Q91Y21 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Pcdha1Q91Y21 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC21.8■■□□□ 1.08
Pcdha1Q91Y21 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
Pcdha1Q91Y21 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
Pcdha1Q91Y21 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Pcdha1Q91Y21 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
Pcdha1Q91Y21 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
Pcdha1Q91Y21 Gm42418-201ENSMUST00000182010 1831 ntBASIC21.79■■□□□ 1.08
Pcdha1Q91Y21 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC21.79■■□□□ 1.08
Pcdha1Q91Y21 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Pcdha1Q91Y21 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Pcdha1Q91Y21 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Pcdha1Q91Y21 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC21.79■■□□□ 1.08
Pcdha1Q91Y21 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Pcdha1Q91Y21 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Pcdha1Q91Y21 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Pcdha1Q91Y21 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
Pcdha1Q91Y21 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Pcdha1Q91Y21 Gm37415-201ENSMUST00000192265 2054 ntBASIC21.78■■□□□ 1.08
Pcdha1Q91Y21 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Pcdha1Q91Y21 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Pcdha1Q91Y21 Gm12922-201ENSMUST00000120626 809 ntBASIC21.78■■□□□ 1.08
Pcdha1Q91Y21 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Pcdha1Q91Y21 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Pcdha1Q91Y21 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Pcdha1Q91Y21 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Pcdha1Q91Y21 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Pcdha1Q91Y21 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Pcdha1Q91Y21 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Pcdha1Q91Y21 AC116713.1-201ENSMUST00000215074 430 ntBASIC21.77■■□□□ 1.08
Pcdha1Q91Y21 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC21.77■■□□□ 1.08
Pcdha1Q91Y21 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Pcdha1Q91Y21 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Pcdha1Q91Y21 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Pcdha1Q91Y21 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Pcdha1Q91Y21 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Pcdha1Q91Y21 Gm21956-201ENSMUST00000179946 522 ntBASIC21.76■■□□□ 1.07
Pcdha1Q91Y21 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Pcdha1Q91Y21 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Pcdha1Q91Y21 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Pcdha1Q91Y21 Gm43034-201ENSMUST00000198678 1364 ntBASIC21.75■■□□□ 1.07
Pcdha1Q91Y21 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Pcdha1Q91Y21 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Pcdha1Q91Y21 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Pcdha1Q91Y21 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Pcdha1Q91Y21 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC21.75■■□□□ 1.07
Pcdha1Q91Y21 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Pcdha1Q91Y21 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC21.75■■□□□ 1.07
Pcdha1Q91Y21 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Pcdha1Q91Y21 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Pcdha1Q91Y21 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Pcdha1Q91Y21 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC21.75■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms