Protein–RNA interactions for Protein: Q6T3U4

Npc1l1, Niemann-Pick C1-like protein 1, mousemouse

Predictions only

Length 1,333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Npc1l1Q6T3U4 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
Npc1l1Q6T3U4 Gm26766-202ENSMUST00000227544 2347 ntBASIC25.28■■□□□ 1.64
Npc1l1Q6T3U4 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC25.28■■□□□ 1.64
Npc1l1Q6T3U4 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC25.28■■□□□ 1.64
Npc1l1Q6T3U4 Gm10620-201ENSMUST00000098379 1332 ntBASIC25.28■■□□□ 1.64
Npc1l1Q6T3U4 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Npc1l1Q6T3U4 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC25.27■■□□□ 1.64
Npc1l1Q6T3U4 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Npc1l1Q6T3U4 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC25.27■■□□□ 1.64
Npc1l1Q6T3U4 Gm12922-201ENSMUST00000120626 809 ntBASIC25.27■■□□□ 1.64
Npc1l1Q6T3U4 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC25.27■■□□□ 1.64
Npc1l1Q6T3U4 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC25.27■■□□□ 1.64
Npc1l1Q6T3U4 Gm37415-201ENSMUST00000192265 2054 ntBASIC25.27■■□□□ 1.64
Npc1l1Q6T3U4 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC25.26■■□□□ 1.64
Npc1l1Q6T3U4 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
Npc1l1Q6T3U4 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
Npc1l1Q6T3U4 AC140930.3-201ENSMUST00000222935 274 ntBASIC25.26■■□□□ 1.63
Npc1l1Q6T3U4 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC25.26■■□□□ 1.63
Npc1l1Q6T3U4 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
Npc1l1Q6T3U4 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC25.25■■□□□ 1.63
Npc1l1Q6T3U4 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC25.25■■□□□ 1.63
Npc1l1Q6T3U4 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
Npc1l1Q6T3U4 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
Npc1l1Q6T3U4 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Npc1l1Q6T3U4 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Npc1l1Q6T3U4 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC25.24■■□□□ 1.63
Npc1l1Q6T3U4 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC25.23■■□□□ 1.63
Npc1l1Q6T3U4 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
Npc1l1Q6T3U4 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
Npc1l1Q6T3U4 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Npc1l1Q6T3U4 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Npc1l1Q6T3U4 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
Npc1l1Q6T3U4 Gm17641-201ENSMUST00000166328 2350 ntBASIC25.22■■□□□ 1.63
Npc1l1Q6T3U4 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC25.22■■□□□ 1.63
Npc1l1Q6T3U4 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
Npc1l1Q6T3U4 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Npc1l1Q6T3U4 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC25.22■■□□□ 1.63
Npc1l1Q6T3U4 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Npc1l1Q6T3U4 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC25.22■■□□□ 1.63
Npc1l1Q6T3U4 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC25.21■■□□□ 1.63
Npc1l1Q6T3U4 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC25.21■■□□□ 1.63
Npc1l1Q6T3U4 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC25.21■■□□□ 1.63
Npc1l1Q6T3U4 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
Npc1l1Q6T3U4 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
Npc1l1Q6T3U4 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Npc1l1Q6T3U4 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
Npc1l1Q6T3U4 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
Npc1l1Q6T3U4 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Npc1l1Q6T3U4 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
Npc1l1Q6T3U4 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC25.2■■□□□ 1.62
Npc1l1Q6T3U4 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC25.2■■□□□ 1.62
Npc1l1Q6T3U4 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC25.19■■□□□ 1.62
Npc1l1Q6T3U4 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC25.19■■□□□ 1.62
Npc1l1Q6T3U4 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
Npc1l1Q6T3U4 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
Npc1l1Q6T3U4 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
Npc1l1Q6T3U4 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC25.19■■□□□ 1.62
Npc1l1Q6T3U4 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Npc1l1Q6T3U4 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC25.19■■□□□ 1.62
Npc1l1Q6T3U4 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Npc1l1Q6T3U4 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
Npc1l1Q6T3U4 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Npc1l1Q6T3U4 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Npc1l1Q6T3U4 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Npc1l1Q6T3U4 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
Npc1l1Q6T3U4 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC25.18■■□□□ 1.62
Npc1l1Q6T3U4 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
Npc1l1Q6T3U4 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC25.18■■□□□ 1.62
Npc1l1Q6T3U4 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
Npc1l1Q6T3U4 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC25.18■■□□□ 1.62
Npc1l1Q6T3U4 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC25.18■■□□□ 1.62
Npc1l1Q6T3U4 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
Npc1l1Q6T3U4 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
Npc1l1Q6T3U4 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
Npc1l1Q6T3U4 Appbp2os-202ENSMUST00000206972 447 ntBASIC25.17■■□□□ 1.62
Npc1l1Q6T3U4 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC25.17■■□□□ 1.62
Npc1l1Q6T3U4 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Npc1l1Q6T3U4 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC25.17■■□□□ 1.62
Npc1l1Q6T3U4 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC25.16■■□□□ 1.62
Npc1l1Q6T3U4 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Npc1l1Q6T3U4 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC25.16■■□□□ 1.62
Npc1l1Q6T3U4 Serp2-204ENSMUST00000228055 705 ntBASIC25.16■■□□□ 1.62
Npc1l1Q6T3U4 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Npc1l1Q6T3U4 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Npc1l1Q6T3U4 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
Npc1l1Q6T3U4 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
Npc1l1Q6T3U4 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC25.15■■□□□ 1.62
Npc1l1Q6T3U4 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Npc1l1Q6T3U4 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
Npc1l1Q6T3U4 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Npc1l1Q6T3U4 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Npc1l1Q6T3U4 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Npc1l1Q6T3U4 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC25.14■■□□□ 1.62
Npc1l1Q6T3U4 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Npc1l1Q6T3U4 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC25.14■■□□□ 1.62
Npc1l1Q6T3U4 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Npc1l1Q6T3U4 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
Npc1l1Q6T3U4 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Npc1l1Q6T3U4 AC164883.3-201ENSMUST00000227396 1774 ntBASIC25.14■■□□□ 1.61
Npc1l1Q6T3U4 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC25.14■■□□□ 1.61
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms