Protein–RNA interactions for Protein: P50220

Nkx2-1, Homeobox protein Nkx-2.1, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-1P50220 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nkx2-1P50220 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Nkx2-1P50220 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nkx2-1P50220 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Nkx2-1P50220 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Nkx2-1P50220 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Nkx2-1P50220 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Nkx2-1P50220 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nkx2-1P50220 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nkx2-1P50220 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
Nkx2-1P50220 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Nkx2-1P50220 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC17.22■□□□□ 0.35
Nkx2-1P50220 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nkx2-1P50220 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nkx2-1P50220 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC17.21■□□□□ 0.35
Nkx2-1P50220 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nkx2-1P50220 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nkx2-1P50220 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nkx2-1P50220 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Nkx2-1P50220 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Nkx2-1P50220 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Nkx2-1P50220 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.34
Nkx2-1P50220 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nkx2-1P50220 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nkx2-1P50220 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Nkx2-1P50220 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nkx2-1P50220 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Nkx2-1P50220 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nkx2-1P50220 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC17.2■□□□□ 0.34
Nkx2-1P50220 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Nkx2-1P50220 Gm6311-201ENSMUST00000073790 878 ntBASIC17.2■□□□□ 0.34
Nkx2-1P50220 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Nkx2-1P50220 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Nkx2-1P50220 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC17.19■□□□□ 0.34
Nkx2-1P50220 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Nkx2-1P50220 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC17.19■□□□□ 0.34
Nkx2-1P50220 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Nkx2-1P50220 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Nkx2-1P50220 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Nkx2-1P50220 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Nkx2-1P50220 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC17.18■□□□□ 0.34
Nkx2-1P50220 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Nkx2-1P50220 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Nkx2-1P50220 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Nkx2-1P50220 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Nkx2-1P50220 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC17.17■□□□□ 0.34
Nkx2-1P50220 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
Nkx2-1P50220 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC17.17■□□□□ 0.34
Nkx2-1P50220 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Nkx2-1P50220 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Nkx2-1P50220 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Nkx2-1P50220 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Nkx2-1P50220 Gm15043-201ENSMUST00000118843 1543 ntBASIC17.16■□□□□ 0.34
Nkx2-1P50220 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Nkx2-1P50220 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Nkx2-1P50220 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC17.16■□□□□ 0.34
Nkx2-1P50220 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
Nkx2-1P50220 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Nkx2-1P50220 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Nkx2-1P50220 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Nkx2-1P50220 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nkx2-1P50220 AC164883.3-201ENSMUST00000227396 1774 ntBASIC17.15■□□□□ 0.34
Nkx2-1P50220 Gm34220-201ENSMUST00000223001 2709 ntBASIC17.15■□□□□ 0.34
Nkx2-1P50220 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nkx2-1P50220 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nkx2-1P50220 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC17.15■□□□□ 0.34
Nkx2-1P50220 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nkx2-1P50220 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Nkx2-1P50220 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Nkx2-1P50220 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nkx2-1P50220 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Nkx2-1P50220 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC17.15■□□□□ 0.34
Nkx2-1P50220 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nkx2-1P50220 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nkx2-1P50220 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Nkx2-1P50220 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nkx2-1P50220 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nkx2-1P50220 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nkx2-1P50220 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nkx2-1P50220 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC17.14■□□□□ 0.33
Nkx2-1P50220 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nkx2-1P50220 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nkx2-1P50220 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nkx2-1P50220 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Nkx2-1P50220 Gm4430-201ENSMUST00000192413 1943 ntBASIC17.13■□□□□ 0.33
Nkx2-1P50220 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nkx2-1P50220 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nkx2-1P50220 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Nkx2-1P50220 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nkx2-1P50220 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC17.13■□□□□ 0.33
Nkx2-1P50220 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC17.13■□□□□ 0.33
Nkx2-1P50220 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Nkx2-1P50220 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nkx2-1P50220 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nkx2-1P50220 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nkx2-1P50220 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nkx2-1P50220 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nkx2-1P50220 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nkx2-1P50220 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nkx2-1P50220 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 13.5 ms