Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rfx3P48381 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Rfx3P48381 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rfx3P48381 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rfx3P48381 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Rfx3P48381 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
Rfx3P48381 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rfx3P48381 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rfx3P48381 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rfx3P48381 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC18.79■□□□□ 0.6
Rfx3P48381 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC18.79■□□□□ 0.6
Rfx3P48381 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rfx3P48381 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rfx3P48381 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Rfx3P48381 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rfx3P48381 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rfx3P48381 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rfx3P48381 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rfx3P48381 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Rfx3P48381 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rfx3P48381 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Rfx3P48381 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC18.78■□□□□ 0.6
Rfx3P48381 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rfx3P48381 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC18.78■□□□□ 0.6
Rfx3P48381 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
Rfx3P48381 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rfx3P48381 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
Rfx3P48381 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
Rfx3P48381 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rfx3P48381 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Rfx3P48381 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rfx3P48381 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rfx3P48381 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC18.77■□□□□ 0.6
Rfx3P48381 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Rfx3P48381 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Rfx3P48381 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rfx3P48381 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rfx3P48381 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Rfx3P48381 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rfx3P48381 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.6
Rfx3P48381 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Rfx3P48381 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rfx3P48381 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rfx3P48381 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rfx3P48381 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Rfx3P48381 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rfx3P48381 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Rfx3P48381 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rfx3P48381 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Rfx3P48381 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rfx3P48381 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC18.76■□□□□ 0.59
Rfx3P48381 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rfx3P48381 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rfx3P48381 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rfx3P48381 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Rfx3P48381 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
Rfx3P48381 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rfx3P48381 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC18.75■□□□□ 0.59
Rfx3P48381 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC18.74■□□□□ 0.59
Rfx3P48381 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rfx3P48381 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Rfx3P48381 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rfx3P48381 Gm5067-201ENSMUST00000170449 1009 ntBASIC18.74■□□□□ 0.59
Rfx3P48381 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC18.74■□□□□ 0.59
Rfx3P48381 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rfx3P48381 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rfx3P48381 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC18.74■□□□□ 0.59
Rfx3P48381 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rfx3P48381 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Rfx3P48381 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rfx3P48381 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC18.73■□□□□ 0.59
Rfx3P48381 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rfx3P48381 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Rfx3P48381 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Rfx3P48381 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rfx3P48381 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rfx3P48381 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Rfx3P48381 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rfx3P48381 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC18.72■□□□□ 0.59
Rfx3P48381 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Rfx3P48381 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rfx3P48381 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rfx3P48381 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC18.72■□□□□ 0.59
Rfx3P48381 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rfx3P48381 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Rfx3P48381 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rfx3P48381 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rfx3P48381 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rfx3P48381 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC18.72■□□□□ 0.59
Rfx3P48381 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
Rfx3P48381 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rfx3P48381 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rfx3P48381 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rfx3P48381 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Rfx3P48381 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rfx3P48381 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rfx3P48381 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rfx3P48381 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Rfx3P48381 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC18.71■□□□□ 0.59
Rfx3P48381 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 15.9 ms