Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Lmx1bO88609 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Lmx1bO88609 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC18.92■□□□□ 0.62
Lmx1bO88609 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Lmx1bO88609 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC18.92■□□□□ 0.62
Lmx1bO88609 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Lmx1bO88609 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Lmx1bO88609 Gm10620-201ENSMUST00000098379 1332 ntBASIC18.92■□□□□ 0.62
Lmx1bO88609 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Lmx1bO88609 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Lmx1bO88609 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Lmx1bO88609 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Lmx1bO88609 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Lmx1bO88609 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Lmx1bO88609 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC18.91■□□□□ 0.62
Lmx1bO88609 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC18.91■□□□□ 0.62
Lmx1bO88609 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Lmx1bO88609 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Lmx1bO88609 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Lmx1bO88609 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Lmx1bO88609 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Lmx1bO88609 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Lmx1bO88609 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC18.9■□□□□ 0.62
Lmx1bO88609 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Lmx1bO88609 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Lmx1bO88609 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Lmx1bO88609 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Lmx1bO88609 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC18.89■□□□□ 0.61
Lmx1bO88609 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Lmx1bO88609 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Lmx1bO88609 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Lmx1bO88609 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Lmx1bO88609 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC18.89■□□□□ 0.61
Lmx1bO88609 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Lmx1bO88609 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Lmx1bO88609 Gm32051-202ENSMUST00000197905 2385 ntBASIC18.88■□□□□ 0.61
Lmx1bO88609 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Lmx1bO88609 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Lmx1bO88609 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Lmx1bO88609 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Lmx1bO88609 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Lmx1bO88609 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Lmx1bO88609 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Lmx1bO88609 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Lmx1bO88609 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC18.87■□□□□ 0.61
Lmx1bO88609 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Lmx1bO88609 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Lmx1bO88609 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Lmx1bO88609 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Lmx1bO88609 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Lmx1bO88609 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Lmx1bO88609 AC158990.1-201ENSMUST00000221450 2016 ntBASIC18.87■□□□□ 0.61
Lmx1bO88609 Gm13042-201ENSMUST00000119244 1955 ntBASIC18.86■□□□□ 0.61
Lmx1bO88609 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Lmx1bO88609 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Lmx1bO88609 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Lmx1bO88609 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC18.86■□□□□ 0.61
Lmx1bO88609 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC18.86■□□□□ 0.61
Lmx1bO88609 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Lmx1bO88609 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC18.85■□□□□ 0.61
Lmx1bO88609 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Lmx1bO88609 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Lmx1bO88609 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Lmx1bO88609 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Lmx1bO88609 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Lmx1bO88609 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Lmx1bO88609 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Lmx1bO88609 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Lmx1bO88609 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Lmx1bO88609 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Lmx1bO88609 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Lmx1bO88609 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Lmx1bO88609 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Lmx1bO88609 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Lmx1bO88609 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC18.83■□□□□ 0.6
Lmx1bO88609 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC18.83■□□□□ 0.6
Lmx1bO88609 Gm9847-201ENSMUST00000052528 599 ntBASIC18.83■□□□□ 0.6
Lmx1bO88609 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Lmx1bO88609 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC18.83■□□□□ 0.6
Lmx1bO88609 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lmx1bO88609 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC18.82■□□□□ 0.6
Lmx1bO88609 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
Lmx1bO88609 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Lmx1bO88609 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Lmx1bO88609 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lmx1bO88609 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lmx1bO88609 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Lmx1bO88609 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Lmx1bO88609 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lmx1bO88609 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
Lmx1bO88609 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lmx1bO88609 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lmx1bO88609 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lmx1bO88609 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lmx1bO88609 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lmx1bO88609 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
Lmx1bO88609 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lmx1bO88609 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lmx1bO88609 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lmx1bO88609 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms