Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Gm11618-201ENSMUST00000117946 267 ntBASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Gm43822-201ENSMUST00000200285 476 ntBASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Gm43371-201ENSMUST00000202838 1031 ntBASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 AC154305.4-201ENSMUST00000224520 614 ntBASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Gm10146-201ENSMUST00000072739 309 ntBASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 AC122840.1-201ENSMUST00000220915 3334 ntBASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Hk3-202ENSMUST00000123097 2896 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 Asrgl1-201ENSMUST00000049948 4195 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sh3rf1Q69ZI1 B4galt1-201ENSMUST00000030121 3983 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Eif5-212ENSMUST00000222375 3547 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Eif5-213ENSMUST00000222388 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Gm43174-201ENSMUST00000195914 2445 ntBASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Gm5638-201ENSMUST00000118618 1258 ntBASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Mir8109-201ENSMUST00000184375 117 ntBASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Gm37497-201ENSMUST00000195830 798 ntBASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Gm19309-201ENSMUST00000218295 205 ntBASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Gm16372-201ENSMUST00000073088 450 ntBASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Epb41l2-204ENSMUST00000217929 3621 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sh3rf1Q69ZI1 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.39
Sh3rf1Q69ZI1 Arhgef3-204ENSMUST00000225949 3198 ntBASIC12.65□□□□□ -0.39
Sh3rf1Q69ZI1 Pml-211ENSMUST00000153820 2652 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.39
Sh3rf1Q69ZI1 Sin3b-201ENSMUST00000004494 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Nlrx1-202ENSMUST00000168499 3579 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Sec14l4-201ENSMUST00000019512 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Zscan29-201ENSMUST00000079024 2465 ntTSL 5 BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 C2cd4c-201ENSMUST00000059699 6729 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Gm38266-201ENSMUST00000194931 421 ntBASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Gm45930-201ENSMUST00000221330 292 ntBASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 AC133598.1-201ENSMUST00000224327 660 ntBASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Gm2824-203ENSMUST00000226189 1228 ntBASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Cox17-201ENSMUST00000050273 444 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 87.2 ms