Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Gm27390-201ENSMUST00000184516 176 ntBASIC11.3□□□□□ -0.6
Rfx3P48381 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC11.3□□□□□ -0.6
Rfx3P48381 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC11.3□□□□□ -0.6
Rfx3P48381 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC11.3□□□□□ -0.6
Rfx3P48381 AC155237.1-201ENSMUST00000226196 1279 ntBASIC11.3□□□□□ -0.6
Rfx3P48381 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 n-R5s77-201ENSMUST00000083757 119 ntBASIC11.3□□□□□ -0.6
Rfx3P48381 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC11.3□□□□□ -0.6
Rfx3P48381 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC11.3□□□□□ -0.6
Rfx3P48381 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
Rfx3P48381 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC11.3□□□□□ -0.6
Rfx3P48381 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC11.3□□□□□ -0.6
Rfx3P48381 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Asrgl1-201ENSMUST00000049948 4195 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Gm14608-201ENSMUST00000120030 1553 ntBASIC11.29□□□□□ -0.6
Rfx3P48381 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 St6galnac6-201ENSMUST00000072111 2277 ntAPPRIS P3 TSL 5 BASIC11.29□□□□□ -0.6
Rfx3P48381 Gfra1-203ENSMUST00000129100 4415 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Rfx3P48381 Abca7-201ENSMUST00000043866 6590 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC11.29□□□□□ -0.6
Rfx3P48381 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Gm14921-201ENSMUST00000118643 908 ntBASIC11.29□□□□□ -0.6
Rfx3P48381 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC11.29□□□□□ -0.6
Rfx3P48381 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Rfx3P48381 Gm16479-201ENSMUST00000121706 932 ntBASIC11.29□□□□□ -0.6
Rfx3P48381 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC11.29□□□□□ -0.6
Rfx3P48381 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC11.29□□□□□ -0.6
Rfx3P48381 Gm22331-201ENSMUST00000158066 136 ntBASIC11.29□□□□□ -0.6
Rfx3P48381 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC11.29□□□□□ -0.6
Rfx3P48381 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Gm17208-201ENSMUST00000168388 535 ntBASIC11.29□□□□□ -0.6
Rfx3P48381 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC11.29□□□□□ -0.6
Rfx3P48381 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Gm24196-201ENSMUST00000179161 110 ntBASIC11.29□□□□□ -0.6
Rfx3P48381 Gm27847-201ENSMUST00000183711 107 ntBASIC11.29□□□□□ -0.6
Rfx3P48381 Gm27375-201ENSMUST00000183799 107 ntBASIC11.29□□□□□ -0.6
Rfx3P48381 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC11.29□□□□□ -0.6
Rfx3P48381 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC11.29□□□□□ -0.6
Rfx3P48381 Gm7067-201ENSMUST00000207698 1249 ntBASIC11.29□□□□□ -0.6
Rfx3P48381 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC11.29□□□□□ -0.6
Rfx3P48381 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
Rfx3P48381 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
Rfx3P48381 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Prkag2-202ENSMUST00000076306 2838 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Gm13050-201ENSMUST00000122149 1345 ntBASIC11.29□□□□□ -0.6
Rfx3P48381 Dock11-201ENSMUST00000033419 6665 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Slc37a2-201ENSMUST00000115068 5943 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Tmem266-202ENSMUST00000085754 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
Rfx3P48381 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Prc1-206ENSMUST00000173824 2912 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Rfx3P48381 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Rfx3P48381 Slc44a1-204ENSMUST00000107647 2176 ntTSL 2 BASIC11.28□□□□□ -0.6
Rfx3P48381 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Rfx3P48381 Gja8-201ENSMUST00000062944 6940 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Rfx3P48381 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Rfx3P48381 Arhgef3-204ENSMUST00000225949 3198 ntBASIC11.28□□□□□ -0.6
Rfx3P48381 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Rfx3P48381 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Rfx3P48381 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Rfx3P48381 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Rfx3P48381 Abcc10-201ENSMUST00000047970 4885 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Rfx3P48381 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC11.28□□□□□ -0.6
Rfx3P48381 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC11.28□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 55.1 ms