Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Zfp866-202ENSMUST00000137573 3245 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Sdc1P18828 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Sdc1P18828 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Sdc1P18828 Gm45650-201ENSMUST00000211162 2169 ntTSL 5 BASIC10.22□□□□□ -0.77
Sdc1P18828 Arhgef15-203ENSMUST00000108671 4372 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
Sdc1P18828 Mob3b-201ENSMUST00000102975 6030 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Sdc1P18828 Igfbp5-201ENSMUST00000027377 6006 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Sdc1P18828 Slc25a48-201ENSMUST00000021971 3374 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Sdc1P18828 Mmp25-201ENSMUST00000024696 3373 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Sdc1P18828 Cdh20-201ENSMUST00000062528 4012 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Sdc1P18828 Slc5a8-201ENSMUST00000020255 5331 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Sdc1P18828 Nrde2-201ENSMUST00000021596 3718 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
Sdc1P18828 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Sdc1P18828 Btnl1-201ENSMUST00000080254 1861 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
Sdc1P18828 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Sdc1P18828 Gm11400-201ENSMUST00000120853 1214 ntBASIC10.22□□□□□ -0.77
Sdc1P18828 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC10.22□□□□□ -0.77
Sdc1P18828 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Sdc1P18828 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC10.22□□□□□ -0.77
Sdc1P18828 Gm17271-201ENSMUST00000165535 355 ntBASIC10.22□□□□□ -0.77
Sdc1P18828 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC10.22□□□□□ -0.77
Sdc1P18828 Gm29608-201ENSMUST00000190444 463 ntBASIC10.22□□□□□ -0.77
Sdc1P18828 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Sdc1P18828 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC10.22□□□□□ -0.77
Sdc1P18828 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC10.22□□□□□ -0.77
Sdc1P18828 AC098716.1-201ENSMUST00000213527 703 ntBASIC10.22□□□□□ -0.77
Sdc1P18828 AC131710.1-201ENSMUST00000228336 990 ntBASIC10.22□□□□□ -0.77
Sdc1P18828 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Sdc1P18828 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Sdc1P18828 Recql4-201ENSMUST00000036852 3922 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Sdc1P18828 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC10.22□□□□□ -0.77
Sdc1P18828 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Sdc1P18828 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC10.22□□□□□ -0.77
Sdc1P18828 Adamts13-201ENSMUST00000014996 3474 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Sdc1P18828 Itga4-201ENSMUST00000099972 9767 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Sdc1P18828 Slit2-216ENSMUST00000174313 7734 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Sdc1P18828 Gm37580-201ENSMUST00000192408 2800 ntBASIC10.22□□□□□ -0.77
Sdc1P18828 Orc5-201ENSMUST00000030872 2103 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Sdc1P18828 Galr1-201ENSMUST00000065224 2871 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Sdc1P18828 Slc6a2-202ENSMUST00000165470 6007 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Sdc1P18828 Dcun1d3-202ENSMUST00000098080 3072 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Sdc1P18828 Nedd9-202ENSMUST00000163623 4626 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
Sdc1P18828 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Sdc1P18828 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC10.21□□□□□ -0.77
Sdc1P18828 Lef1-201ENSMUST00000029611 3482 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.77
Sdc1P18828 Matn2-201ENSMUST00000022947 3551 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.77
Sdc1P18828 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC10.21□□□□□ -0.77
Sdc1P18828 Arfgap1-201ENSMUST00000029092 2714 ntAPPRIS P3 TSL 1 (best) BASIC10.21□□□□□ -0.77
Sdc1P18828 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
Sdc1P18828 Gm33677-201ENSMUST00000220074 2765 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
Sdc1P18828 Rad51b-202ENSMUST00000171210 1858 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Sdc1P18828 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC10.21□□□□□ -0.77
Sdc1P18828 Btrc-209ENSMUST00000224478 2194 ntBASIC10.21□□□□□ -0.77
Sdc1P18828 Lipo2-201ENSMUST00000147153 3562 ntAPPRIS P1 TSL 5 BASIC10.21□□□□□ -0.77
Sdc1P18828 Gm9544-201ENSMUST00000223349 2482 ntBASIC10.21□□□□□ -0.77
Sdc1P18828 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC10.21□□□□□ -0.77
Sdc1P18828 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC10.21□□□□□ -0.77
Sdc1P18828 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC10.21□□□□□ -0.77
Sdc1P18828 Gm38297-201ENSMUST00000195122 1057 ntBASIC10.21□□□□□ -0.77
Sdc1P18828 Gm31597-201ENSMUST00000211176 515 ntTSL 2 BASIC10.21□□□□□ -0.77
Sdc1P18828 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC10.21□□□□□ -0.77
Sdc1P18828 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
Sdc1P18828 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Sdc1P18828 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Sdc1P18828 Tmem140-201ENSMUST00000074949 2614 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Sdc1P18828 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Sdc1P18828 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Sdc1P18828 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC10.21□□□□□ -0.78
Sdc1P18828 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.78
Sdc1P18828 Fhdc1-202ENSMUST00000107689 5918 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Sdc1P18828 Prpf40b-208ENSMUST00000136980 3047 ntAPPRIS ALT2 TSL 5 BASIC10.21□□□□□ -0.78
Sdc1P18828 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC10.21□□□□□ -0.78
Sdc1P18828 Syk-201ENSMUST00000055087 5122 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.78
Sdc1P18828 Kif1a-203ENSMUST00000171556 5391 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Sdc1P18828 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Sdc1P18828 Slc36a4-201ENSMUST00000061568 6539 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.78
Sdc1P18828 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC10.21□□□□□ -0.78
Sdc1P18828 Adcy8-201ENSMUST00000023007 6990 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.78
Sdc1P18828 Dlk1-201ENSMUST00000056110 4653 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Sdc1P18828 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Sdc1P18828 Numa1-201ENSMUST00000084852 7180 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Sdc1P18828 Gm10548-201ENSMUST00000097631 2629 ntBASIC10.2□□□□□ -0.78
Sdc1P18828 Hvcn1-202ENSMUST00000100747 2805 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Sdc1P18828 Inpp4a-206ENSMUST00000132615 3038 ntTSL 5 BASIC10.2□□□□□ -0.78
Sdc1P18828 5031434O11Rik-201ENSMUST00000180404 3731 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Sdc1P18828 Myo7a-204ENSMUST00000107128 7506 ntAPPRIS ALT2 TSL 5 BASIC10.2□□□□□ -0.78
Sdc1P18828 Map4-214ENSMUST00000199498 4055 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Sdc1P18828 Scml2-206ENSMUST00000112345 4847 ntAPPRIS ALT2 TSL 5 BASIC10.2□□□□□ -0.78
Sdc1P18828 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC10.2□□□□□ -0.78
Sdc1P18828 Gm7336-201ENSMUST00000107041 1232 ntBASIC10.2□□□□□ -0.78
Sdc1P18828 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC10.2□□□□□ -0.78
Sdc1P18828 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Sdc1P18828 Plcd4-206ENSMUST00000113750 2692 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Sdc1P18828 Kalrn-206ENSMUST00000114954 4677 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Sdc1P18828 Gm13884-201ENSMUST00000118103 829 ntBASIC10.2□□□□□ -0.78
Sdc1P18828 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Sdc1P18828 Gm13394-201ENSMUST00000121658 1000 ntBASIC10.2□□□□□ -0.78
Sdc1P18828 Gm11745-201ENSMUST00000121669 448 ntBASIC10.2□□□□□ -0.78
Sdc1P18828 Gm14760-201ENSMUST00000121831 999 ntBASIC10.2□□□□□ -0.78
Sdc1P18828 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Retrieved 100 of 76,532 protein–RNA pairs in 51.3 ms