Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Gm15897-201ENSMUST00000117770 1486 ntBASIC14.06□□□□□ -0.16
Ushbp1Q8R370 AC113441.2-201ENSMUST00000221538 1468 ntBASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Gm9630-201ENSMUST00000178304 885 ntBASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Gm45484-201ENSMUST00000210310 1141 ntBASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC14.06□□□□□ -0.16
Ushbp1Q8R370 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Gm13394-201ENSMUST00000121658 1000 ntBASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Gm14760-201ENSMUST00000121831 999 ntBASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Gm38092-201ENSMUST00000195600 653 ntBASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Gm21769-201ENSMUST00000211922 111 ntBASIC14.05□□□□□ -0.16
Ushbp1Q8R370 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 AC165260.3-202ENSMUST00000224550 1031 ntBASIC14.05□□□□□ -0.16
Ushbp1Q8R370 CT030182.1-201ENSMUST00000225935 533 ntBASIC14.05□□□□□ -0.16
Ushbp1Q8R370 AC022775.2-201ENSMUST00000227885 646 ntBASIC14.05□□□□□ -0.16
Ushbp1Q8R370 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Gm8793-201ENSMUST00000183069 1303 ntBASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ushbp1Q8R370 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC14.04□□□□□ -0.16
Ushbp1Q8R370 Gm5780-201ENSMUST00000217774 1834 ntBASIC14.04□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms