Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Gm11989-201ENSMUST00000117240 672 ntBASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Gm11362-201ENSMUST00000118838 850 ntBASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Gm13461-201ENSMUST00000120980 662 ntBASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Gm16172-201ENSMUST00000156224 682 ntTSL 3 BASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Gm5732-201ENSMUST00000182596 1007 ntBASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Smim22-207ENSMUST00000184439 382 ntAPPRIS P3 TSL 2 BASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Gm7467-201ENSMUST00000185173 652 ntBASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Gm5369-201ENSMUST00000217499 588 ntBASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 AC159308.2-201ENSMUST00000213592 2325 ntBASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Gm30238-201ENSMUST00000195528 2603 ntBASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Upf3aQ3ULJ3 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Spata48-201ENSMUST00000020410 1430 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Taf6l-202ENSMUST00000010249 848 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Gm24934-201ENSMUST00000103764 111 ntBASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Gm13045-201ENSMUST00000119019 712 ntBASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Gm13408-201ENSMUST00000119822 798 ntBASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Gm13935-201ENSMUST00000121859 798 ntBASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Gm23119-201ENSMUST00000158610 140 ntBASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Gm3508-201ENSMUST00000186012 792 ntBASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Olfr959-201ENSMUST00000079178 1055 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3aQ3ULJ3 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Sirt2-209ENSMUST00000170068 1585 ntTSL 5 BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Gm42928-201ENSMUST00000197338 3339 ntBASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Snx29-202ENSMUST00000115814 1125 ntTSL 5 BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Crnde-207ENSMUST00000180102 732 ntTSL 3 BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Gm18038-201ENSMUST00000197900 485 ntBASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Gm43962-201ENSMUST00000203898 190 ntBASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Gm9826-201ENSMUST00000029124 1299 ntBASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Ankrd7-201ENSMUST00000031489 1190 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3aQ3ULJ3 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC13.16□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 50.8 ms