Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 2810407A14Rik-201ENSMUST00000069809 1699 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
RaraP11416 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RaraP11416 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
RaraP11416 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
RaraP11416 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RaraP11416 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC13.55□□□□□ -0.24
RaraP11416 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
RaraP11416 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
RaraP11416 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RaraP11416 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
RaraP11416 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
RaraP11416 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RaraP11416 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
RaraP11416 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
RaraP11416 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RaraP11416 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RaraP11416 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
RaraP11416 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RaraP11416 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
RaraP11416 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
RaraP11416 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RaraP11416 Gm14132-201ENSMUST00000117188 1719 ntBASIC13.54□□□□□ -0.24
RaraP11416 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
RaraP11416 Mup-ps23-201ENSMUST00000118063 630 ntBASIC13.54□□□□□ -0.24
RaraP11416 Gm15806-201ENSMUST00000120696 955 ntBASIC13.54□□□□□ -0.24
RaraP11416 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
RaraP11416 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
RaraP11416 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
RaraP11416 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RaraP11416 Gm27847-201ENSMUST00000183711 107 ntBASIC13.54□□□□□ -0.24
RaraP11416 Gm27375-201ENSMUST00000183799 107 ntBASIC13.54□□□□□ -0.24
RaraP11416 Gm27486-201ENSMUST00000184923 80 ntBASIC13.54□□□□□ -0.24
RaraP11416 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC13.54□□□□□ -0.24
RaraP11416 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC13.54□□□□□ -0.24
RaraP11416 AC098716.1-201ENSMUST00000213527 703 ntBASIC13.54□□□□□ -0.24
RaraP11416 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
RaraP11416 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RaraP11416 Gm24526-201ENSMUST00000082921 158 ntBASIC13.54□□□□□ -0.24
RaraP11416 Gm6091-201ENSMUST00000098307 165 ntBASIC13.54□□□□□ -0.24
RaraP11416 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
RaraP11416 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
RaraP11416 Olfr283-202ENSMUST00000215830 2392 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
RaraP11416 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RaraP11416 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RaraP11416 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
RaraP11416 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RaraP11416 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
RaraP11416 Taok2-202ENSMUST00000117394 4985 ntAPPRIS P4 TSL 1 (best) BASIC13.54□□□□□ -0.24
RaraP11416 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
RaraP11416 Gm15897-201ENSMUST00000117770 1486 ntBASIC13.54□□□□□ -0.24
RaraP11416 Gm37324-201ENSMUST00000194500 4504 ntBASIC13.54□□□□□ -0.24
RaraP11416 AC122840.1-201ENSMUST00000220915 3334 ntBASIC13.54□□□□□ -0.24
RaraP11416 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
RaraP11416 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
RaraP11416 Cisd2-201ENSMUST00000029815 3361 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RaraP11416 Ptprr-204ENSMUST00000128399 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
RaraP11416 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RaraP11416 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
RaraP11416 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
RaraP11416 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
RaraP11416 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC13.53□□□□□ -0.24
RaraP11416 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RaraP11416 Fbxl12-201ENSMUST00000086458 2056 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
RaraP11416 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RaraP11416 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
RaraP11416 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
RaraP11416 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
RaraP11416 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC13.53□□□□□ -0.24
RaraP11416 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
RaraP11416 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
RaraP11416 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
RaraP11416 Fancc-217ENSMUST00000163091 2995 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
RaraP11416 Gm9794-201ENSMUST00000202370 423 ntBASIC13.53□□□□□ -0.24
RaraP11416 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC13.53□□□□□ -0.24
RaraP11416 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
RaraP11416 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RaraP11416 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RaraP11416 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RaraP11416 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RaraP11416 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RaraP11416 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
RaraP11416 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RaraP11416 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RaraP11416 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RaraP11416 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RaraP11416 Gm44806-201ENSMUST00000205574 2303 ntBASIC13.53□□□□□ -0.24
RaraP11416 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RaraP11416 AC154517.2-201ENSMUST00000220829 2458 ntBASIC13.53□□□□□ -0.24
RaraP11416 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RaraP11416 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
RaraP11416 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
RaraP11416 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC13.52□□□□□ -0.24
RaraP11416 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
RaraP11416 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
RaraP11416 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
RaraP11416 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
RaraP11416 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
RaraP11416 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC13.52□□□□□ -0.24
RaraP11416 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
RaraP11416 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 57.1 ms