Protein–RNA interactions for Protein: Q9QZR9

Col4a4, Collagen alpha-4(IV) chain, mousemouse

Predictions only

Length 1,682 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a4Q9QZR9 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Gm6655-201ENSMUST00000201932 1309 ntBASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 AC164107.1-201ENSMUST00000227730 2161 ntBASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 AC129931.1-201ENSMUST00000228865 1861 ntBASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Trav13d-1-201ENSMUST00000103588 396 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Polr2j-203ENSMUST00000111129 474 ntTSL 3 BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Gm12791-201ENSMUST00000120788 655 ntBASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Gm24248-201ENSMUST00000157321 322 ntBASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Gm22846-201ENSMUST00000157706 270 ntBASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Cnfn-202ENSMUST00000167591 698 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Gm34379-201ENSMUST00000195036 290 ntBASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Gm42430-201ENSMUST00000197209 616 ntBASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Atp5h-201ENSMUST00000043931 625 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Spata46-201ENSMUST00000056991 771 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Gm6509-201ENSMUST00000098286 1218 ntTSL 5 BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Gm1110-201ENSMUST00000115261 1996 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Col4a4Q9QZR9 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Ighv1-50-201ENSMUST00000103521 390 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Trav11-201ENSMUST00000103585 343 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Trav11d-201ENSMUST00000103648 342 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Trmt10b-202ENSMUST00000107800 983 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Srpk1-202ENSMUST00000114767 445 ntTSL 3 BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Gm6630-201ENSMUST00000119199 454 ntBASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Ndufb5-204ENSMUST00000127477 1079 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Bach2it1-201ENSMUST00000133451 481 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Gm11789-203ENSMUST00000140645 737 ntTSL 2 BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Aknaos-201ENSMUST00000144095 1104 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Gm14198-201ENSMUST00000153208 948 ntTSL 2 BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Gm12406-201ENSMUST00000155382 697 ntTSL 3 BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 1700007P06Rik-201ENSMUST00000160380 823 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 1700006J14Rik-204ENSMUST00000161511 574 ntTSL 3 BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Gm21844-201ENSMUST00000178699 663 ntTSL 3 BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Gm28833-201ENSMUST00000189671 559 ntBASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Trav11n-201ENSMUST00000200113 343 ntBASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 AI839979-201ENSMUST00000200738 654 ntTSL 2 BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Gm39288-201ENSMUST00000210554 446 ntBASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 AC124752.1-201ENSMUST00000222131 776 ntTSL 5 BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Gm5513-201ENSMUST00000072982 1218 ntBASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Naa10-202ENSMUST00000096316 892 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Etv1-205ENSMUST00000160856 1474 ntTSL 5 BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Gm8110-202ENSMUST00000211297 1782 ntTSL 5 BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Morf4l2-202ENSMUST00000080411 1859 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col4a4Q9QZR9 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col4a4Q9QZR9 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col4a4Q9QZR9 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col4a4Q9QZR9 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Col4a4Q9QZR9 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC12.23□□□□□ -0.45
Col4a4Q9QZR9 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col4a4Q9QZR9 Mir181d-201ENSMUST00000102383 72 ntBASIC12.23□□□□□ -0.45
Col4a4Q9QZR9 Gm23912-201ENSMUST00000104687 87 ntBASIC12.23□□□□□ -0.45
Col4a4Q9QZR9 Smim8-204ENSMUST00000108133 935 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col4a4Q9QZR9 Rbfox1-202ENSMUST00000115841 1191 ntTSL 5 BASIC12.23□□□□□ -0.45
Col4a4Q9QZR9 Gm11884-201ENSMUST00000131639 641 ntTSL 5 BASIC12.23□□□□□ -0.45
Col4a4Q9QZR9 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col4a4Q9QZR9 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC12.23□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 53.5 ms