Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm9954-202ENSMUST00000198686 4725 ntBASIC16.21■□□□□ 0.19
Col18a1P39061 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col18a1P39061 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col18a1P39061 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Col18a1P39061 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col18a1P39061 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col18a1P39061 Gm37513-201ENSMUST00000194830 2268 ntBASIC16.21■□□□□ 0.19
Col18a1P39061 Gm38378-201ENSMUST00000195153 2268 ntBASIC16.21■□□□□ 0.19
Col18a1P39061 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col18a1P39061 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col18a1P39061 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.18
Col18a1P39061 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
Col18a1P39061 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Col18a1P39061 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC16.21■□□□□ 0.18
Col18a1P39061 Zdhhc21-202ENSMUST00000107239 1148 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Col18a1P39061 Olfr1267-ps1-201ENSMUST00000118957 930 ntAPPRIS P1 BASIC16.21■□□□□ 0.18
Col18a1P39061 Ndufc2-202ENSMUST00000149122 470 ntTSL 2 BASIC16.21■□□□□ 0.18
Col18a1P39061 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Col18a1P39061 Gm17597-201ENSMUST00000181220 1115 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Col18a1P39061 Gm9192-201ENSMUST00000183221 985 ntBASIC16.21■□□□□ 0.18
Col18a1P39061 Gm45469-201ENSMUST00000210468 854 ntTSL 3 BASIC16.21■□□□□ 0.18
Col18a1P39061 P2rx7-202ENSMUST00000086247 712 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Col18a1P39061 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col18a1P39061 Mocs2-216ENSMUST00000184672 1447 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Col18a1P39061 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col18a1P39061 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col18a1P39061 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col18a1P39061 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col18a1P39061 Platr19-201ENSMUST00000171380 1466 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col18a1P39061 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Col18a1P39061 Sgca-202ENSMUST00000103162 1724 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Col18a1P39061 Gm13707-201ENSMUST00000123663 600 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col18a1P39061 Gm13026-201ENSMUST00000140113 608 ntTSL 5 BASIC16.2■□□□□ 0.18
Col18a1P39061 Rps19-ps10-201ENSMUST00000159750 435 ntBASIC16.2■□□□□ 0.18
Col18a1P39061 1700007P06Rik-201ENSMUST00000160380 823 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col18a1P39061 Ins2-208ENSMUST00000162317 297 ntTSL 5 BASIC16.2■□□□□ 0.18
Col18a1P39061 Gm9081-201ENSMUST00000182346 991 ntBASIC16.2■□□□□ 0.18
Col18a1P39061 Crygb-201ENSMUST00000027090 634 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col18a1P39061 1810013D15Rik-201ENSMUST00000029827 300 ntTSL 5 BASIC16.2■□□□□ 0.18
Col18a1P39061 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col18a1P39061 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col18a1P39061 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col18a1P39061 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col18a1P39061 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col18a1P39061 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col18a1P39061 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col18a1P39061 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Col18a1P39061 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Col18a1P39061 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col18a1P39061 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col18a1P39061 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col18a1P39061 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col18a1P39061 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col18a1P39061 Cast-212ENSMUST00000223309 1529 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Col18a1P39061 Ccndbp1-208ENSMUST00000171260 1187 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Col18a1P39061 1700017I07Rik-201ENSMUST00000184823 462 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Col18a1P39061 Gm37782-201ENSMUST00000194879 678 ntBASIC16.19■□□□□ 0.18
Col18a1P39061 1700013M08Rik-202ENSMUST00000200080 798 ntBASIC16.19■□□□□ 0.18
Col18a1P39061 Nkg7-201ENSMUST00000070518 881 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col18a1P39061 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col18a1P39061 Rpl3-201ENSMUST00000081650 1293 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col18a1P39061 Gm14820-201ENSMUST00000126286 1449 ntTSL 3 BASIC16.19■□□□□ 0.18
Col18a1P39061 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col18a1P39061 AC164702.1-201ENSMUST00000220135 2212 ntBASIC16.19■□□□□ 0.18
Col18a1P39061 Tmem138-201ENSMUST00000025568 1590 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col18a1P39061 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col18a1P39061 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Col18a1P39061 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col18a1P39061 Gm4735-201ENSMUST00000138679 1302 ntBASIC16.19■□□□□ 0.18
Col18a1P39061 Gm5855-201ENSMUST00000200240 1305 ntBASIC16.19■□□□□ 0.18
Col18a1P39061 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col18a1P39061 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col18a1P39061 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col18a1P39061 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Col18a1P39061 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Col18a1P39061 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col18a1P39061 Mapk1ip1-201ENSMUST00000075667 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col18a1P39061 Gm23255-201ENSMUST00000102244 110 ntBASIC16.18■□□□□ 0.18
Col18a1P39061 Tnnt3-214ENSMUST00000105953 1049 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col18a1P39061 Gm13204-201ENSMUST00000120110 821 ntBASIC16.18■□□□□ 0.18
Col18a1P39061 Gm14034-201ENSMUST00000120147 551 ntBASIC16.18■□□□□ 0.18
Col18a1P39061 Mc5r-201ENSMUST00000172148 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col18a1P39061 Gm17709-201ENSMUST00000174536 1096 ntBASIC16.18■□□□□ 0.18
Col18a1P39061 Pdcd5-ps-201ENSMUST00000191699 381 ntBASIC16.18■□□□□ 0.18
Col18a1P39061 C630004L07Rik-201ENSMUST00000193236 1275 ntBASIC16.18■□□□□ 0.18
Col18a1P39061 Gm5907-202ENSMUST00000210969 661 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col18a1P39061 Gm20735-202ENSMUST00000212387 519 ntTSL 2 BASIC16.18■□□□□ 0.18
Col18a1P39061 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Col18a1P39061 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC16.18■□□□□ 0.18
Col18a1P39061 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
Col18a1P39061 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col18a1P39061 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC16.18■□□□□ 0.18
Col18a1P39061 Slc13a5-206ENSMUST00000208912 1751 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Col18a1P39061 AC126262.1-201ENSMUST00000221802 1904 ntBASIC16.18■□□□□ 0.18
Col18a1P39061 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col18a1P39061 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col18a1P39061 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col18a1P39061 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col18a1P39061 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col18a1P39061 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms