Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col1a1P11087 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col1a1P11087 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col1a1P11087 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Col1a1P11087 Ormdl2-201ENSMUST00000026409 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col1a1P11087 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col1a1P11087 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Col1a1P11087 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col1a1P11087 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col1a1P11087 F10-205ENSMUST00000152034 1449 ntTSL 5 BASIC14.53□□□□□ -0.08
Col1a1P11087 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Col1a1P11087 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col1a1P11087 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC14.53□□□□□ -0.08
Col1a1P11087 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Col1a1P11087 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col1a1P11087 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Col1a1P11087 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Col1a1P11087 Gm12516-201ENSMUST00000120819 385 ntBASIC14.53□□□□□ -0.08
Col1a1P11087 Gm8737-201ENSMUST00000122208 642 ntBASIC14.53□□□□□ -0.08
Col1a1P11087 F12-202ENSMUST00000170921 478 ntTSL 3 BASIC14.53□□□□□ -0.08
Col1a1P11087 Ctdspl-202ENSMUST00000172464 798 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
Col1a1P11087 Gm18636-201ENSMUST00000218846 1066 ntBASIC14.53□□□□□ -0.08
Col1a1P11087 Gm9774-201ENSMUST00000047300 1064 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col1a1P11087 Olfr117-201ENSMUST00000073636 954 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Col1a1P11087 Olfr130-201ENSMUST00000087129 954 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Col1a1P11087 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col1a1P11087 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col1a1P11087 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col1a1P11087 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC14.53□□□□□ -0.08
Col1a1P11087 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
Col1a1P11087 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC14.53□□□□□ -0.08
Col1a1P11087 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col1a1P11087 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col1a1P11087 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col1a1P11087 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col1a1P11087 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col1a1P11087 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Col1a1P11087 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col1a1P11087 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col1a1P11087 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col1a1P11087 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Col1a1P11087 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Col1a1P11087 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
Col1a1P11087 Pcnp-203ENSMUST00000119981 901 ntTSL 3 BASIC14.52□□□□□ -0.08
Col1a1P11087 Gm14760-201ENSMUST00000121831 999 ntBASIC14.52□□□□□ -0.08
Col1a1P11087 Dnmt3bos-201ENSMUST00000124988 718 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Col1a1P11087 Agtpbp1-219ENSMUST00000170378 653 ntTSL 3 BASIC14.52□□□□□ -0.08
Col1a1P11087 Gm10731-201ENSMUST00000181171 448 ntBASIC14.52□□□□□ -0.08
Col1a1P11087 Mir8115-201ENSMUST00000184992 119 ntBASIC14.52□□□□□ -0.08
Col1a1P11087 Dnajb6-212ENSMUST00000198694 505 ntTSL 3 BASIC14.52□□□□□ -0.08
Col1a1P11087 AC124457.1-201ENSMUST00000198845 120 ntBASIC14.52□□□□□ -0.08
Col1a1P11087 Gm35549-201ENSMUST00000203176 735 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Col1a1P11087 Gm9797-202ENSMUST00000218003 294 ntBASIC14.52□□□□□ -0.08
Col1a1P11087 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col1a1P11087 Gm25517-201ENSMUST00000083865 134 ntBASIC14.52□□□□□ -0.08
Col1a1P11087 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col1a1P11087 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col1a1P11087 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Col1a1P11087 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col1a1P11087 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col1a1P11087 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col1a1P11087 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col1a1P11087 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col1a1P11087 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col1a1P11087 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Col1a1P11087 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col1a1P11087 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col1a1P11087 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col1a1P11087 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col1a1P11087 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC14.52□□□□□ -0.09
Col1a1P11087 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col1a1P11087 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Col1a1P11087 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Col1a1P11087 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col1a1P11087 2610005L07Rik-201ENSMUST00000139264 948 ntBASIC14.51□□□□□ -0.09
Col1a1P11087 Rprl1-201ENSMUST00000158050 327 ntBASIC14.51□□□□□ -0.09
Col1a1P11087 Gm8815-201ENSMUST00000173809 620 ntBASIC14.51□□□□□ -0.09
Col1a1P11087 Gm21092-201ENSMUST00000178995 955 ntBASIC14.51□□□□□ -0.09
Col1a1P11087 Gm28686-201ENSMUST00000187404 609 ntBASIC14.51□□□□□ -0.09
Col1a1P11087 Gm43520-201ENSMUST00000197996 164 ntBASIC14.51□□□□□ -0.09
Col1a1P11087 Smco2-201ENSMUST00000032433 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col1a1P11087 1810009A15Rik-201ENSMUST00000096251 806 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col1a1P11087 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Col1a1P11087 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col1a1P11087 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Col1a1P11087 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col1a1P11087 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col1a1P11087 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col1a1P11087 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col1a1P11087 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col1a1P11087 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col1a1P11087 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col1a1P11087 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Col1a1P11087 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col1a1P11087 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col1a1P11087 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col1a1P11087 Gm13384-201ENSMUST00000117166 1344 ntBASIC14.51□□□□□ -0.09
Col1a1P11087 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Col1a1P11087 Gm5385-201ENSMUST00000118988 1559 ntBASIC14.51□□□□□ -0.09
Col1a1P11087 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms