Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Slc20a1-202ENSMUST00000110315 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sh3rf1Q69ZI1 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Armcx2-203ENSMUST00000119010 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Gm8213-201ENSMUST00000118191 441 ntBASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Rn7sk-201ENSMUST00000083103 331 ntBASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Gm26315-201ENSMUST00000083890 321 ntBASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sh3rf1Q69ZI1 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Sh3rf1Q69ZI1 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sh3rf1Q69ZI1 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Sh3rf1Q69ZI1 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.36
Sh3rf1Q69ZI1 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
Sh3rf1Q69ZI1 Gm44806-201ENSMUST00000205574 2303 ntBASIC12.77□□□□□ -0.36
Sh3rf1Q69ZI1 Prc1-206ENSMUST00000173824 2912 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Sh3rf1Q69ZI1 Tmem200a-203ENSMUST00000218232 3510 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sh3rf1Q69ZI1 CT025678.1-201ENSMUST00000214795 2972 ntBASIC12.77□□□□□ -0.36
Sh3rf1Q69ZI1 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Sh3rf1Q69ZI1 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 Gm10156-201ENSMUST00000122364 462 ntBASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 Gm6013-201ENSMUST00000212264 699 ntBASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 Gm9823-201ENSMUST00000051212 327 ntBASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 Gm43061-201ENSMUST00000198850 2241 ntBASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sh3rf1Q69ZI1 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Gm5687-201ENSMUST00000118252 640 ntBASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Gm1335-201ENSMUST00000121653 386 ntBASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Gm44124-201ENSMUST00000204159 472 ntBASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Gm18054-201ENSMUST00000207539 555 ntBASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 CU024892.2-201ENSMUST00000224608 832 ntBASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 AC138604.1-201ENSMUST00000226969 739 ntBASIC12.76□□□□□ -0.37
Sh3rf1Q69ZI1 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms