Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC10.41□□□□□ -0.74
Hmgb3O54879 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Hmgb3O54879 Ctps2-205ENSMUST00000112302 3223 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Hmgb3O54879 Sec22c-201ENSMUST00000078547 5713 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Hmgb3O54879 Zfp654-202ENSMUST00000207826 6261 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
Hmgb3O54879 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC10.41□□□□□ -0.74
Hmgb3O54879 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Hmgb3O54879 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
Hmgb3O54879 Gm44806-201ENSMUST00000205574 2303 ntBASIC10.41□□□□□ -0.74
Hmgb3O54879 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Hmgb3O54879 Tmem132a-201ENSMUST00000025645 3657 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Hmgb3O54879 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
Hmgb3O54879 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Hmgb3O54879 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
Hmgb3O54879 Armcx2-203ENSMUST00000119010 3007 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Hmgb3O54879 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Hmgb3O54879 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC10.41□□□□□ -0.74
Hmgb3O54879 Fam206a-201ENSMUST00000045368 4275 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Hmgb3O54879 Slc20a1-202ENSMUST00000110315 3219 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Hmgb3O54879 2810407A14Rik-201ENSMUST00000069809 1699 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Hmgb3O54879 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Hmgb3O54879 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Hmgb3O54879 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC10.4□□□□□ -0.74
Hmgb3O54879 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC10.4□□□□□ -0.74
Hmgb3O54879 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Hmgb3O54879 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Hmgb3O54879 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC10.4□□□□□ -0.74
Hmgb3O54879 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC10.4□□□□□ -0.74
Hmgb3O54879 Gm5648-201ENSMUST00000122244 1587 ntBASIC10.4□□□□□ -0.74
Hmgb3O54879 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Hmgb3O54879 Pcdhb19-201ENSMUST00000059571 7138 ntAPPRIS P1 BASIC10.4□□□□□ -0.74
Hmgb3O54879 Gm14685-202ENSMUST00000179117 2773 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Hmgb3O54879 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC10.4□□□□□ -0.74
Hmgb3O54879 Cacng5-201ENSMUST00000039071 3705 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Hmgb3O54879 Ska3-201ENSMUST00000022536 2260 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Hmgb3O54879 Helq-201ENSMUST00000044684 3689 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Hmgb3O54879 Gm28036-202ENSMUST00000132494 5505 ntAPPRIS P5 TSL 2 BASIC10.4□□□□□ -0.74
Hmgb3O54879 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Hmgb3O54879 Thbs2-201ENSMUST00000170872 5922 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Hmgb3O54879 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC10.4□□□□□ -0.74
Hmgb3O54879 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC10.4□□□□□ -0.74
Hmgb3O54879 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Hmgb3O54879 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Hmgb3O54879 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Hmgb3O54879 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Hmgb3O54879 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC10.4□□□□□ -0.74
Hmgb3O54879 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC10.4□□□□□ -0.74
Hmgb3O54879 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Hmgb3O54879 Nlrx1-202ENSMUST00000168499 3579 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Hmgb3O54879 Sel1l-201ENSMUST00000021347 6300 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Hmgb3O54879 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Hmgb3O54879 AC156031.2-201ENSMUST00000213107 3310 ntBASIC10.4□□□□□ -0.74
Hmgb3O54879 Mei1-201ENSMUST00000089178 3974 ntAPPRIS ALT2 TSL 5 BASIC10.4□□□□□ -0.74
Hmgb3O54879 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC10.4□□□□□ -0.74
Hmgb3O54879 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC10.4□□□□□ -0.74
Hmgb3O54879 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Hmgb3O54879 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Hmgb3O54879 Stk32b-201ENSMUST00000094836 3458 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Hmgb3O54879 Qrich1-202ENSMUST00000112155 3040 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Hmgb3O54879 Pabpc4-202ENSMUST00000080178 3019 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Hmgb3O54879 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Hmgb3O54879 Hdac6-202ENSMUST00000115642 4069 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.75
Hmgb3O54879 Atxn2l-203ENSMUST00000167759 4023 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.75
Hmgb3O54879 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC10.4□□□□□ -0.75
Hmgb3O54879 Pnma2-201ENSMUST00000089236 5518 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.75
Hmgb3O54879 Mtmr4-201ENSMUST00000092802 5525 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
Hmgb3O54879 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC10.4□□□□□ -0.75
Hmgb3O54879 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC10.4□□□□□ -0.75
Hmgb3O54879 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.75
Hmgb3O54879 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
Hmgb3O54879 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC10.4□□□□□ -0.75
Hmgb3O54879 Tbcd-201ENSMUST00000103013 3906 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hmgb3O54879 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Hmgb3O54879 Rpgrip1-202ENSMUST00000111603 5380 ntAPPRIS P2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hmgb3O54879 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hmgb3O54879 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Hmgb3O54879 Mtor-202ENSMUST00000103221 8564 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hmgb3O54879 9430038I01Rik-203ENSMUST00000120340 4643 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hmgb3O54879 5033428I22Rik-204ENSMUST00000210633 6652 ntTSL 5 BASIC10.39□□□□□ -0.75
Hmgb3O54879 Nudt15-201ENSMUST00000043813 3579 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hmgb3O54879 Pcdh18-202ENSMUST00000191794 5146 ntTSL 5 BASIC10.39□□□□□ -0.75
Hmgb3O54879 Chd8-212ENSMUST00000200169 8509 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
Hmgb3O54879 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hmgb3O54879 Ap1g2-201ENSMUST00000036041 2673 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hmgb3O54879 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hmgb3O54879 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Hmgb3O54879 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hmgb3O54879 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Hmgb3O54879 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hmgb3O54879 Cd63-ps-201ENSMUST00000145417 875 ntBASIC10.39□□□□□ -0.75
Hmgb3O54879 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hmgb3O54879 Gm17795-201ENSMUST00000214505 757 ntBASIC10.39□□□□□ -0.75
Hmgb3O54879 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Hmgb3O54879 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Hmgb3O54879 Abcc4-201ENSMUST00000036554 5715 ntAPPRIS P3 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hmgb3O54879 Sema3f-201ENSMUST00000080560 3395 ntAPPRIS P3 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hmgb3O54879 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC10.39□□□□□ -0.75
Hmgb3O54879 Cobl-202ENSMUST00000109650 5271 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
Hmgb3O54879 Grin1-208ENSMUST00000114318 3920 ntTSL 5 BASIC10.39□□□□□ -0.75
Hmgb3O54879 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Retrieved 100 of 76,532 protein–RNA pairs in 530.7 ms