Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Ncan-201ENSMUST00000002412 7195 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Gm7789-202ENSMUST00000211273 1400 ntBASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Gm3287-205ENSMUST00000228893 1332 ntBASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Gm5850-201ENSMUST00000192923 1206 ntBASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Gm22058-201ENSMUST00000083393 310 ntBASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Gm42748-201ENSMUST00000199354 2341 ntBASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Upf3bQ3ULL6 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Gm15703-201ENSMUST00000120250 880 ntBASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Gm13394-201ENSMUST00000121658 1000 ntBASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Gm42627-201ENSMUST00000197347 224 ntBASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Gm18054-201ENSMUST00000207539 555 ntBASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 AC108416.1-202ENSMUST00000228927 1201 ntBASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Gpr19-203ENSMUST00000111932 1711 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 AC123834.1-201ENSMUST00000225346 2043 ntBASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Upf3bQ3ULL6 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Gm43823-201ENSMUST00000197391 1808 ntBASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 70.5 ms