Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Trim28Q62318 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim28Q62318 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC16.29■□□□□ 0.2
Trim28Q62318 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim28Q62318 Slamf7-204ENSMUST00000194531 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim28Q62318 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim28Q62318 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Trim28Q62318 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trim28Q62318 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim28Q62318 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim28Q62318 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim28Q62318 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trim28Q62318 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim28Q62318 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC16.28■□□□□ 0.2
Trim28Q62318 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Trim28Q62318 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim28Q62318 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim28Q62318 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim28Q62318 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim28Q62318 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim28Q62318 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC16.28■□□□□ 0.2
Trim28Q62318 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC16.28■□□□□ 0.2
Trim28Q62318 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Trim28Q62318 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC16.28■□□□□ 0.2
Trim28Q62318 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC16.28■□□□□ 0.2
Trim28Q62318 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trim28Q62318 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trim28Q62318 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim28Q62318 Gm9630-201ENSMUST00000178304 885 ntBASIC16.28■□□□□ 0.2
Trim28Q62318 Dhrs4-202ENSMUST00000226168 828 ntBASIC16.28■□□□□ 0.2
Trim28Q62318 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim28Q62318 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim28Q62318 Gm5455-201ENSMUST00000058710 715 ntBASIC16.28■□□□□ 0.2
Trim28Q62318 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC16.28■□□□□ 0.2
Trim28Q62318 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Trim28Q62318 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC16.28■□□□□ 0.2
Trim28Q62318 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim28Q62318 Gm9361-201ENSMUST00000198695 1507 ntBASIC16.28■□□□□ 0.2
Trim28Q62318 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim28Q62318 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim28Q62318 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim28Q62318 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trim28Q62318 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trim28Q62318 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trim28Q62318 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trim28Q62318 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Trim28Q62318 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trim28Q62318 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trim28Q62318 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trim28Q62318 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.2
Trim28Q62318 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trim28Q62318 Gm15711-201ENSMUST00000118889 535 ntBASIC16.27■□□□□ 0.2
Trim28Q62318 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC16.27■□□□□ 0.2
Trim28Q62318 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trim28Q62318 Gm43962-201ENSMUST00000203898 190 ntBASIC16.27■□□□□ 0.2
Trim28Q62318 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC16.27■□□□□ 0.2
Trim28Q62318 Gm19208-201ENSMUST00000213861 912 ntBASIC16.27■□□□□ 0.2
Trim28Q62318 Ndufaf5-201ENSMUST00000044825 1166 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trim28Q62318 Olfr605-201ENSMUST00000080660 1011 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Trim28Q62318 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trim28Q62318 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Trim28Q62318 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trim28Q62318 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trim28Q62318 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trim28Q62318 Gm43289-201ENSMUST00000200537 1475 ntBASIC16.27■□□□□ 0.19
Trim28Q62318 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trim28Q62318 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Trim28Q62318 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trim28Q62318 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trim28Q62318 AC154747.3-201ENSMUST00000224471 3470 ntBASIC16.27■□□□□ 0.19
Trim28Q62318 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim28Q62318 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim28Q62318 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Trim28Q62318 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trim28Q62318 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim28Q62318 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Trim28Q62318 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim28Q62318 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim28Q62318 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim28Q62318 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trim28Q62318 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC16.26■□□□□ 0.19
Trim28Q62318 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC16.26■□□□□ 0.19
Trim28Q62318 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC16.26■□□□□ 0.19
Trim28Q62318 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim28Q62318 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC16.26■□□□□ 0.19
Trim28Q62318 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim28Q62318 Gm42928-201ENSMUST00000197338 3339 ntBASIC16.26■□□□□ 0.19
Trim28Q62318 Gm44260-201ENSMUST00000204946 2094 ntBASIC16.26■□□□□ 0.19
Trim28Q62318 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim28Q62318 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim28Q62318 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trim28Q62318 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim28Q62318 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trim28Q62318 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trim28Q62318 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim28Q62318 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
Trim28Q62318 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trim28Q62318 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim28Q62318 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim28Q62318 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 44.3 ms