Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Selenbp2-204ENSMUST00000173849 1323 ntTSL 5 BASIC18.96■□□□□ 0.63
Col17a1Q07563 Erg-208ENSMUST00000176345 1222 ntTSL 5 BASIC18.96■□□□□ 0.63
Col17a1Q07563 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Col17a1Q07563 Gm19015-201ENSMUST00000184002 1189 ntBASIC18.96■□□□□ 0.63
Col17a1Q07563 Kif4-ps-202ENSMUST00000185083 652 ntBASIC18.96■□□□□ 0.63
Col17a1Q07563 Gm28415-201ENSMUST00000187528 452 ntTSL 2 BASIC18.96■□□□□ 0.63
Col17a1Q07563 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Col17a1Q07563 Gm36970-201ENSMUST00000193688 1859 ntBASIC18.96■□□□□ 0.63
Col17a1Q07563 Gm43695-201ENSMUST00000196545 196 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Col17a1Q07563 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC18.96■□□□□ 0.63
Col17a1Q07563 Map7-203ENSMUST00000213312 795 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Col17a1Q07563 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Col17a1Q07563 Park2-210ENSMUST00000218435 865 ntTSL 5 BASIC18.96■□□□□ 0.63
Col17a1Q07563 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col17a1Q07563 CT009527.1-201ENSMUST00000224205 339 ntBASIC18.96■□□□□ 0.63
Col17a1Q07563 4930546C10Rik-201ENSMUST00000025428 363 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Col17a1Q07563 Ppp1r32-201ENSMUST00000038842 1458 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col17a1Q07563 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col17a1Q07563 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Col17a1Q07563 Srsf5-201ENSMUST00000094693 1527 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col17a1Q07563 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col17a1Q07563 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Col17a1Q07563 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Col17a1Q07563 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
Col17a1Q07563 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col17a1Q07563 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col17a1Q07563 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Col17a1Q07563 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC18.95■□□□□ 0.62
Col17a1Q07563 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col17a1Q07563 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC18.95■□□□□ 0.62
Col17a1Q07563 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Col17a1Q07563 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Col17a1Q07563 Gm25562-201ENSMUST00000104608 133 ntBASIC18.95■□□□□ 0.62
Col17a1Q07563 Gm14052-201ENSMUST00000121434 1031 ntBASIC18.95■□□□□ 0.62
Col17a1Q07563 Mir1905-201ENSMUST00000122779 82 ntBASIC18.95■□□□□ 0.62
Col17a1Q07563 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
Col17a1Q07563 Glrx2-206ENSMUST00000145969 924 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col17a1Q07563 Gm16938-201ENSMUST00000180517 464 ntTSL 5 BASIC18.95■□□□□ 0.62
Col17a1Q07563 Gm37207-201ENSMUST00000194284 296 ntBASIC18.95■□□□□ 0.62
Col17a1Q07563 Gm19931-201ENSMUST00000198920 368 ntBASIC18.95■□□□□ 0.62
Col17a1Q07563 Gm30055-201ENSMUST00000203175 803 ntBASIC18.95■□□□□ 0.62
Col17a1Q07563 Gm18010-201ENSMUST00000203553 202 ntBASIC18.95■□□□□ 0.62
Col17a1Q07563 Gm15802-202ENSMUST00000209595 1094 ntTSL 5 BASIC18.95■□□□□ 0.62
Col17a1Q07563 AC164105.2-201ENSMUST00000215484 524 ntTSL 5 BASIC18.95■□□□□ 0.62
Col17a1Q07563 Prss1-201ENSMUST00000031910 805 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col17a1Q07563 Atp5h-201ENSMUST00000043931 625 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col17a1Q07563 Iah1-201ENSMUST00000076813 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col17a1Q07563 Gm6509-201ENSMUST00000098286 1218 ntTSL 5 BASIC18.95■□□□□ 0.62
Col17a1Q07563 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Col17a1Q07563 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC18.95■□□□□ 0.62
Col17a1Q07563 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Col17a1Q07563 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col17a1Q07563 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col17a1Q07563 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col17a1Q07563 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col17a1Q07563 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col17a1Q07563 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col17a1Q07563 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Col17a1Q07563 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col17a1Q07563 Tmem138-201ENSMUST00000025568 1590 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col17a1Q07563 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col17a1Q07563 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col17a1Q07563 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col17a1Q07563 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col17a1Q07563 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col17a1Q07563 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC18.94■□□□□ 0.62
Col17a1Q07563 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col17a1Q07563 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col17a1Q07563 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col17a1Q07563 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Col17a1Q07563 1700025C18Rik-201ENSMUST00000109304 702 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col17a1Q07563 Gm8234-201ENSMUST00000198523 1107 ntBASIC18.94■□□□□ 0.62
Col17a1Q07563 Sult2b1-207ENSMUST00000210754 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col17a1Q07563 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Col17a1Q07563 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Col17a1Q07563 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col17a1Q07563 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Col17a1Q07563 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col17a1Q07563 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Col17a1Q07563 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Col17a1Q07563 Eno1-201ENSMUST00000080149 1902 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Col17a1Q07563 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col17a1Q07563 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col17a1Q07563 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Col17a1Q07563 Sdcbp-204ENSMUST00000108374 1803 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Col17a1Q07563 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Col17a1Q07563 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Col17a1Q07563 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col17a1Q07563 Gm17606-201ENSMUST00000169818 234 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Col17a1Q07563 Gm26901-202ENSMUST00000193106 256 ntTSL 3 BASIC18.93■□□□□ 0.62
Col17a1Q07563 5033404E19Rik-202ENSMUST00000194748 1065 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Col17a1Q07563 Gm6518-201ENSMUST00000208450 342 ntBASIC18.93■□□□□ 0.62
Col17a1Q07563 Gm3635-201ENSMUST00000212314 354 ntBASIC18.93■□□□□ 0.62
Col17a1Q07563 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Col17a1Q07563 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col17a1Q07563 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Col17a1Q07563 Coro6-202ENSMUST00000052515 1476 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Col17a1Q07563 Cttn-201ENSMUST00000033407 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col17a1Q07563 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col17a1Q07563 Sgca-202ENSMUST00000103162 1724 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 48.5 ms