Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Gm3830-201ENSMUST00000185540 1715 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC10.79□□□□□ -0.68
Col8a1Q00780 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Gm2420-202ENSMUST00000202224 2249 ntBASIC10.79□□□□□ -0.68
Col8a1Q00780 9430091E24Rik-201ENSMUST00000127301 1067 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Tmem190-201ENSMUST00000013235 589 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Kcnmb4os1-201ENSMUST00000134586 824 ntTSL 2 BASIC10.79□□□□□ -0.68
Col8a1Q00780 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC10.79□□□□□ -0.68
Col8a1Q00780 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Gm25951-201ENSMUST00000175330 64 ntBASIC10.79□□□□□ -0.68
Col8a1Q00780 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC10.79□□□□□ -0.68
Col8a1Q00780 Gm37666-201ENSMUST00000194110 866 ntBASIC10.79□□□□□ -0.68
Col8a1Q00780 Gm8365-201ENSMUST00000197334 648 ntBASIC10.79□□□□□ -0.68
Col8a1Q00780 Rprl1-202ENSMUST00000198476 238 ntBASIC10.79□□□□□ -0.68
Col8a1Q00780 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC10.79□□□□□ -0.68
Col8a1Q00780 AC136986.1-201ENSMUST00000222829 380 ntTSL 2 BASIC10.79□□□□□ -0.68
Col8a1Q00780 AC134869.3-201ENSMUST00000225581 343 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
Col8a1Q00780 AC099645.1-201ENSMUST00000226476 1105 ntBASIC10.79□□□□□ -0.68
Col8a1Q00780 Defb36-201ENSMUST00000058086 468 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Cthrc1-201ENSMUST00000067072 1166 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC10.79□□□□□ -0.68
Col8a1Q00780 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Duox1-201ENSMUST00000099461 5267 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
Col8a1Q00780 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC10.79□□□□□ -0.68
Col8a1Q00780 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
Col8a1Q00780 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 B3gat2-201ENSMUST00000063663 5655 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
Col8a1Q00780 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Col8a1Q00780 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC10.78□□□□□ -0.68
Col8a1Q00780 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC10.78□□□□□ -0.68
Col8a1Q00780 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC10.78□□□□□ -0.68
Col8a1Q00780 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
Col8a1Q00780 Cspp1-204ENSMUST00000119714 1268 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Gm11815-201ENSMUST00000139423 708 ntTSL 5 BASIC10.78□□□□□ -0.68
Col8a1Q00780 H1foo-203ENSMUST00000161969 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Scgb1b19-201ENSMUST00000165813 418 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
Col8a1Q00780 Scgb1b3-201ENSMUST00000179481 419 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
Col8a1Q00780 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC10.78□□□□□ -0.68
Col8a1Q00780 Ptbp2-210ENSMUST00000198403 389 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC10.78□□□□□ -0.68
Col8a1Q00780 Ddo-207ENSMUST00000216830 806 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Olfr605-201ENSMUST00000080660 1011 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
Col8a1Q00780 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 C3-201ENSMUST00000024988 5136 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Gm43273-201ENSMUST00000199649 2594 ntBASIC10.78□□□□□ -0.68
Col8a1Q00780 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
Col8a1Q00780 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
Col8a1Q00780 Reln-207ENSMUST00000161356 11699 ntAPPRIS P3 TSL 5 BASIC10.78□□□□□ -0.68
Col8a1Q00780 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Tubb4b-ps2-201ENSMUST00000187481 1337 ntBASIC10.78□□□□□ -0.68
Col8a1Q00780 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC10.78□□□□□ -0.68
Col8a1Q00780 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC10.78□□□□□ -0.68
Col8a1Q00780 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Col8a1Q00780 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms