Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col6a1Q04857 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col6a1Q04857 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col6a1Q04857 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Col6a1Q04857 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col6a1Q04857 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
Col6a1Q04857 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col6a1Q04857 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC13.99□□□□□ -0.17
Col6a1Q04857 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC13.99□□□□□ -0.17
Col6a1Q04857 Krtap20-2-201ENSMUST00000169954 528 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Col6a1Q04857 Gm28727-201ENSMUST00000176549 443 ntTSL 3 BASIC13.99□□□□□ -0.17
Col6a1Q04857 1700119H24Rik-201ENSMUST00000187558 588 ntTSL 5 BASIC13.99□□□□□ -0.17
Col6a1Q04857 Ighv5-7-201ENSMUST00000192302 244 ntBASIC13.99□□□□□ -0.17
Col6a1Q04857 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC13.99□□□□□ -0.17
Col6a1Q04857 Gm9555-201ENSMUST00000200908 583 ntBASIC13.99□□□□□ -0.17
Col6a1Q04857 AC154276.3-201ENSMUST00000227643 998 ntBASIC13.99□□□□□ -0.17
Col6a1Q04857 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Col6a1Q04857 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col6a1Q04857 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col6a1Q04857 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Col6a1Q04857 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC13.99□□□□□ -0.17
Col6a1Q04857 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC13.99□□□□□ -0.17
Col6a1Q04857 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col6a1Q04857 AC139350.1-201ENSMUST00000227064 1594 ntBASIC13.99□□□□□ -0.17
Col6a1Q04857 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col6a1Q04857 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col6a1Q04857 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Col6a1Q04857 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Col6a1Q04857 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col6a1Q04857 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col6a1Q04857 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Col6a1Q04857 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col6a1Q04857 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col6a1Q04857 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC13.98□□□□□ -0.17
Col6a1Q04857 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col6a1Q04857 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Col6a1Q04857 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col6a1Q04857 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Col6a1Q04857 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col6a1Q04857 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC13.98□□□□□ -0.17
Col6a1Q04857 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col6a1Q04857 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col6a1Q04857 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col6a1Q04857 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col6a1Q04857 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col6a1Q04857 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col6a1Q04857 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Col6a1Q04857 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col6a1Q04857 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC13.98□□□□□ -0.17
Col6a1Q04857 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC13.98□□□□□ -0.17
Col6a1Q04857 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Col6a1Q04857 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC13.98□□□□□ -0.17
Col6a1Q04857 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Col6a1Q04857 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC13.98□□□□□ -0.17
Col6a1Q04857 Gm45691-201ENSMUST00000206905 1120 ntBASIC13.98□□□□□ -0.17
Col6a1Q04857 1700027J07Rik-202ENSMUST00000215747 1060 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Col6a1Q04857 Gm18730-201ENSMUST00000218038 343 ntBASIC13.98□□□□□ -0.17
Col6a1Q04857 AC125486.1-201ENSMUST00000218701 320 ntBASIC13.98□□□□□ -0.17
Col6a1Q04857 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col6a1Q04857 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col6a1Q04857 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col6a1Q04857 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col6a1Q04857 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Col6a1Q04857 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col6a1Q04857 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col6a1Q04857 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Col6a1Q04857 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Col6a1Q04857 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Col6a1Q04857 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col6a1Q04857 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col6a1Q04857 Gm7789-202ENSMUST00000211273 1400 ntBASIC13.98□□□□□ -0.17
Col6a1Q04857 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col6a1Q04857 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC13.98□□□□□ -0.17
Col6a1Q04857 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC13.98□□□□□ -0.17
Col6a1Q04857 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col6a1Q04857 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col6a1Q04857 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Col6a1Q04857 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col6a1Q04857 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col6a1Q04857 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col6a1Q04857 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col6a1Q04857 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col6a1Q04857 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Col6a1Q04857 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC13.97□□□□□ -0.17
Col6a1Q04857 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC13.97□□□□□ -0.17
Col6a1Q04857 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col6a1Q04857 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col6a1Q04857 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col6a1Q04857 Gm826-202ENSMUST00000109475 803 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
Col6a1Q04857 Sumo2-203ENSMUST00000117589 987 ntTSL 3 BASIC13.97□□□□□ -0.17
Col6a1Q04857 Gm13492-201ENSMUST00000119772 665 ntBASIC13.97□□□□□ -0.17
Col6a1Q04857 Gm11667-201ENSMUST00000119828 486 ntBASIC13.97□□□□□ -0.17
Col6a1Q04857 Gm19459-201ENSMUST00000176240 835 ntBASIC13.97□□□□□ -0.17
Col6a1Q04857 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC13.97□□□□□ -0.17
Col6a1Q04857 Rprl1-202ENSMUST00000198476 238 ntBASIC13.97□□□□□ -0.17
Col6a1Q04857 Dhrs4-202ENSMUST00000226168 828 ntBASIC13.97□□□□□ -0.17
Col6a1Q04857 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col6a1Q04857 Gm22058-201ENSMUST00000083393 310 ntBASIC13.97□□□□□ -0.17
Col6a1Q04857 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col6a1Q04857 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 37.8 ms