Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 5530401A14Rik-201ENSMUST00000021044 1836 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col11a1Q61245 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Col11a1Q61245 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Col11a1Q61245 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col11a1Q61245 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Col11a1Q61245 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col11a1Q61245 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col11a1Q61245 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC13.9□□□□□ -0.18
Col11a1Q61245 Gm11354-201ENSMUST00000121974 422 ntBASIC13.9□□□□□ -0.18
Col11a1Q61245 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Col11a1Q61245 Mrpl23-ps1-201ENSMUST00000173086 580 ntBASIC13.9□□□□□ -0.18
Col11a1Q61245 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC13.9□□□□□ -0.18
Col11a1Q61245 Gm4654-201ENSMUST00000183305 982 ntBASIC13.9□□□□□ -0.18
Col11a1Q61245 Gm29083-201ENSMUST00000189205 733 ntTSL 3 BASIC13.9□□□□□ -0.18
Col11a1Q61245 Gm37406-201ENSMUST00000192478 500 ntTSL 3 BASIC13.9□□□□□ -0.18
Col11a1Q61245 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Col11a1Q61245 Gm38117-201ENSMUST00000194653 939 ntBASIC13.9□□□□□ -0.18
Col11a1Q61245 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Col11a1Q61245 AC027700.1-201ENSMUST00000213965 370 ntTSL 5 BASIC13.9□□□□□ -0.18
Col11a1Q61245 Gm11149-203ENSMUST00000215465 805 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Col11a1Q61245 Gm3285-201ENSMUST00000218443 908 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
Col11a1Q61245 CT009489.1-201ENSMUST00000227740 1893 ntBASIC13.9□□□□□ -0.18
Col11a1Q61245 AC136376.2-201ENSMUST00000228819 490 ntBASIC13.9□□□□□ -0.18
Col11a1Q61245 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col11a1Q61245 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col11a1Q61245 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col11a1Q61245 Krtap4-2-201ENSMUST00000058987 974 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
Col11a1Q61245 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col11a1Q61245 1700001K19Rik-201ENSMUST00000070659 955 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col11a1Q61245 Tmem220-202ENSMUST00000079077 1147 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col11a1Q61245 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col11a1Q61245 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col11a1Q61245 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col11a1Q61245 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col11a1Q61245 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col11a1Q61245 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Col11a1Q61245 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC13.89□□□□□ -0.19
Col11a1Q61245 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col11a1Q61245 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col11a1Q61245 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC13.89□□□□□ -0.19
Col11a1Q61245 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col11a1Q61245 Gm43267-201ENSMUST00000199664 1796 ntBASIC13.89□□□□□ -0.19
Col11a1Q61245 Gm37131-201ENSMUST00000192502 1561 ntBASIC13.89□□□□□ -0.19
Col11a1Q61245 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col11a1Q61245 Gm7537-201ENSMUST00000221660 1414 ntBASIC13.89□□□□□ -0.19
Col11a1Q61245 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
Col11a1Q61245 Srd5a3-202ENSMUST00000113506 1241 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Col11a1Q61245 Gm11980-201ENSMUST00000121445 986 ntBASIC13.89□□□□□ -0.19
Col11a1Q61245 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC13.89□□□□□ -0.19
Col11a1Q61245 Olfr284-201ENSMUST00000063289 918 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Col11a1Q61245 Prss51-201ENSMUST00000063785 961 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Col11a1Q61245 Try10-201ENSMUST00000072103 860 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col11a1Q61245 Gm10334-201ENSMUST00000095999 876 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col11a1Q61245 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
Col11a1Q61245 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC13.89□□□□□ -0.19
Col11a1Q61245 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Col11a1Q61245 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col11a1Q61245 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col11a1Q61245 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col11a1Q61245 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col11a1Q61245 Gm26783-201ENSMUST00000181197 2377 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Col11a1Q61245 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col11a1Q61245 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col11a1Q61245 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col11a1Q61245 Gm15784-201ENSMUST00000120260 1462 ntBASIC13.88□□□□□ -0.19
Col11a1Q61245 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC13.88□□□□□ -0.19
Col11a1Q61245 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col11a1Q61245 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col11a1Q61245 Prkaca-202ENSMUST00000211558 1399 ntTSL 5 BASIC13.88□□□□□ -0.19
Col11a1Q61245 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC13.88□□□□□ -0.19
Col11a1Q61245 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC13.88□□□□□ -0.19
Col11a1Q61245 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Col11a1Q61245 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Col11a1Q61245 Gm8815-201ENSMUST00000173809 620 ntBASIC13.88□□□□□ -0.19
Col11a1Q61245 Gm6722-201ENSMUST00000221586 390 ntBASIC13.88□□□□□ -0.19
Col11a1Q61245 Mcee-201ENSMUST00000037205 828 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col11a1Q61245 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col11a1Q61245 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Col11a1Q61245 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col11a1Q61245 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC13.88□□□□□ -0.19
Col11a1Q61245 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Col11a1Q61245 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Col11a1Q61245 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col11a1Q61245 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col11a1Q61245 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col11a1Q61245 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col11a1Q61245 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col11a1Q61245 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col11a1Q61245 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC13.88□□□□□ -0.19
Col11a1Q61245 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Col11a1Q61245 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Col11a1Q61245 Gm43677-201ENSMUST00000198098 2378 ntBASIC13.88□□□□□ -0.19
Col11a1Q61245 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col11a1Q61245 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col11a1Q61245 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col11a1Q61245 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC13.88□□□□□ -0.19
Col11a1Q61245 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col11a1Q61245 Gm11949-201ENSMUST00000117640 372 ntBASIC13.87□□□□□ -0.19
Col11a1Q61245 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col11a1Q61245 Crcp-204ENSMUST00000202163 931 ntTSL 2 BASIC13.87□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms