Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.1
Ccdc88aQ5SNZ0 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC14.46□□□□□ -0.1
Ccdc88aQ5SNZ0 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC14.46□□□□□ -0.1
Ccdc88aQ5SNZ0 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC14.46□□□□□ -0.1
Ccdc88aQ5SNZ0 Ankrd7-201ENSMUST00000031489 1190 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Ccdc88aQ5SNZ0 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Ccdc88aQ5SNZ0 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
Ccdc88aQ5SNZ0 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Ccdc88aQ5SNZ0 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Gm11930-201ENSMUST00000117788 190 ntBASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Gm16347-202ENSMUST00000149000 772 ntTSL 3 BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Gm34809-203ENSMUST00000222945 509 ntTSL 5 BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Gm9947-201ENSMUST00000067599 2920 ntBASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC14.45□□□□□ -0.1
Ccdc88aQ5SNZ0 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Gm12314-201ENSMUST00000118104 538 ntBASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Gm11675-201ENSMUST00000121873 832 ntBASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Hsh2d-202ENSMUST00000165324 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Gm5778-201ENSMUST00000171003 1072 ntBASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Pf4-201ENSMUST00000031320 588 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Gm10179-201ENSMUST00000086233 688 ntBASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Fam168a-204ENSMUST00000207564 1083 ntTSL 5 BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc88aQ5SNZ0 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc88aQ5SNZ0 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc88aQ5SNZ0 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC14.43□□□□□ -0.1
Ccdc88aQ5SNZ0 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc88aQ5SNZ0 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Ccdc88aQ5SNZ0 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc88aQ5SNZ0 Daw1-201ENSMUST00000065403 1651 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Ccdc88aQ5SNZ0 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc88aQ5SNZ0 Gm45643-201ENSMUST00000211364 1484 ntBASIC14.43□□□□□ -0.1
Ccdc88aQ5SNZ0 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc88aQ5SNZ0 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC14.43□□□□□ -0.1
Ccdc88aQ5SNZ0 Gm3830-201ENSMUST00000185540 1715 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc88aQ5SNZ0 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc88aQ5SNZ0 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc88aQ5SNZ0 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc88aQ5SNZ0 Gm13888-201ENSMUST00000119148 422 ntBASIC14.43□□□□□ -0.1
Ccdc88aQ5SNZ0 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc88aQ5SNZ0 Gm24845-201ENSMUST00000158034 109 ntBASIC14.43□□□□□ -0.1
Ccdc88aQ5SNZ0 Gm37905-201ENSMUST00000195310 341 ntBASIC14.43□□□□□ -0.1
Ccdc88aQ5SNZ0 Pdzd9-203ENSMUST00000208635 1238 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc88aQ5SNZ0 AC159819.2-201ENSMUST00000216151 342 ntBASIC14.43□□□□□ -0.1
Ccdc88aQ5SNZ0 AC101677.2-201ENSMUST00000218733 741 ntTSL 3 BASIC14.43□□□□□ -0.1
Ccdc88aQ5SNZ0 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc88aQ5SNZ0 Cthrc1-201ENSMUST00000067072 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc88aQ5SNZ0 Snu13-202ENSMUST00000080622 1283 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc88aQ5SNZ0 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc88aQ5SNZ0 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC14.43□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 89.5 ms