Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Sox9Q04887 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Sox9Q04887 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC13.08□□□□□ -0.31
Sox9Q04887 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Sox9Q04887 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC13.08□□□□□ -0.32
Sox9Q04887 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Sox9Q04887 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC13.08□□□□□ -0.32
Sox9Q04887 Gm43364-201ENSMUST00000196046 3274 ntBASIC13.08□□□□□ -0.32
Sox9Q04887 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Prss46-201ENSMUST00000119427 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Mettl1-202ENSMUST00000120542 1044 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Gm15996-201ENSMUST00000161925 762 ntTSL 5 BASIC13.08□□□□□ -0.32
Sox9Q04887 Agtpbp1-216ENSMUST00000168821 721 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC13.08□□□□□ -0.32
Sox9Q04887 Prss46-202ENSMUST00000176403 1257 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Gm6771-201ENSMUST00000182716 1001 ntBASIC13.08□□□□□ -0.32
Sox9Q04887 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC13.08□□□□□ -0.32
Sox9Q04887 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Gm6905-201ENSMUST00000205729 511 ntBASIC13.08□□□□□ -0.32
Sox9Q04887 Gm31401-201ENSMUST00000207352 734 ntTSL 3 BASIC13.08□□□□□ -0.32
Sox9Q04887 Gm4797-201ENSMUST00000219075 1283 ntBASIC13.08□□□□□ -0.32
Sox9Q04887 Gm6867-201ENSMUST00000219165 425 ntBASIC13.08□□□□□ -0.32
Sox9Q04887 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC13.08□□□□□ -0.32
Sox9Q04887 AC163667.3-201ENSMUST00000225774 222 ntBASIC13.08□□□□□ -0.32
Sox9Q04887 AC133602.1-201ENSMUST00000227510 509 ntBASIC13.08□□□□□ -0.32
Sox9Q04887 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Sox9Q04887 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Sox9Q04887 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Sox9Q04887 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Sox9Q04887 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC13.08□□□□□ -0.32
Sox9Q04887 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Sox9Q04887 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Gm45242-201ENSMUST00000210666 2129 ntBASIC13.07□□□□□ -0.32
Sox9Q04887 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC13.07□□□□□ -0.32
Sox9Q04887 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Tsc22d4-204ENSMUST00000110983 1043 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Ywhaq-ps2-201ENSMUST00000117738 643 ntBASIC13.07□□□□□ -0.32
Sox9Q04887 Gm14314-201ENSMUST00000118225 1015 ntBASIC13.07□□□□□ -0.32
Sox9Q04887 Tsc22d1-206ENSMUST00000134109 801 ntTSL 2 BASIC13.07□□□□□ -0.32
Sox9Q04887 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC13.07□□□□□ -0.32
Sox9Q04887 Gm25881-201ENSMUST00000157783 103 ntBASIC13.07□□□□□ -0.32
Sox9Q04887 Crhr2-204ENSMUST00000164012 1263 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Gm4131-201ENSMUST00000186010 1264 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Sox9Q04887 Gm3793-201ENSMUST00000204973 672 ntBASIC13.07□□□□□ -0.32
Sox9Q04887 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC13.07□□□□□ -0.32
Sox9Q04887 Gm11634-202ENSMUST00000209862 573 ntAPPRIS P5 TSL 5 BASIC13.07□□□□□ -0.32
Sox9Q04887 AC154290.1-201ENSMUST00000223786 1240 ntBASIC13.07□□□□□ -0.32
Sox9Q04887 AC154184.3-201ENSMUST00000225620 1090 ntBASIC13.07□□□□□ -0.32
Sox9Q04887 Aamdc-202ENSMUST00000072725 776 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Sox9Q04887 Rdh16f2-201ENSMUST00000092058 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Sox9Q04887 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Sox9Q04887 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Sox9Q04887 Gm43570-201ENSMUST00000199951 3688 ntBASIC13.07□□□□□ -0.32
Sox9Q04887 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Sox9Q04887 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Myo3b-202ENSMUST00000112241 1319 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms