Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Smarca1Q6PGB8 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.35
Smarca1Q6PGB8 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC23.45■■□□□ 1.35
Smarca1Q6PGB8 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.34
Smarca1Q6PGB8 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Smarca1Q6PGB8 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Smarca1Q6PGB8 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC23.45■■□□□ 1.34
Smarca1Q6PGB8 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC23.45■■□□□ 1.34
Smarca1Q6PGB8 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC23.45■■□□□ 1.34
Smarca1Q6PGB8 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Smarca1Q6PGB8 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC23.44■■□□□ 1.34
Smarca1Q6PGB8 Gm45102-201ENSMUST00000207427 857 ntBASIC23.44■■□□□ 1.34
Smarca1Q6PGB8 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC23.44■■□□□ 1.34
Smarca1Q6PGB8 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC23.44■■□□□ 1.34
Smarca1Q6PGB8 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Smarca1Q6PGB8 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Smarca1Q6PGB8 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Smarca1Q6PGB8 Gm15039-201ENSMUST00000118914 875 ntBASIC23.43■■□□□ 1.34
Smarca1Q6PGB8 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
Smarca1Q6PGB8 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC23.43■■□□□ 1.34
Smarca1Q6PGB8 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Smarca1Q6PGB8 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Smarca1Q6PGB8 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Smarca1Q6PGB8 Gm28536-201ENSMUST00000190971 1317 ntBASIC23.42■■□□□ 1.34
Smarca1Q6PGB8 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
Smarca1Q6PGB8 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Smarca1Q6PGB8 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Smarca1Q6PGB8 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Smarca1Q6PGB8 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Smarca1Q6PGB8 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
Smarca1Q6PGB8 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Smarca1Q6PGB8 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC23.41■■□□□ 1.34
Smarca1Q6PGB8 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC23.41■■□□□ 1.34
Smarca1Q6PGB8 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
Smarca1Q6PGB8 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC23.41■■□□□ 1.34
Smarca1Q6PGB8 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
Smarca1Q6PGB8 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC23.41■■□□□ 1.34
Smarca1Q6PGB8 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC23.41■■□□□ 1.34
Smarca1Q6PGB8 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC23.41■■□□□ 1.34
Smarca1Q6PGB8 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC23.4■■□□□ 1.34
Smarca1Q6PGB8 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
Smarca1Q6PGB8 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
Smarca1Q6PGB8 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
Smarca1Q6PGB8 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
Smarca1Q6PGB8 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC23.39■■□□□ 1.34
Smarca1Q6PGB8 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Smarca1Q6PGB8 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.33
Smarca1Q6PGB8 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC23.39■■□□□ 1.33
Smarca1Q6PGB8 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC23.38■■□□□ 1.33
Smarca1Q6PGB8 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Smarca1Q6PGB8 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Smarca1Q6PGB8 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Smarca1Q6PGB8 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Smarca1Q6PGB8 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
Smarca1Q6PGB8 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
Smarca1Q6PGB8 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Smarca1Q6PGB8 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
Smarca1Q6PGB8 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Smarca1Q6PGB8 Gm9959-201ENSMUST00000068277 390 ntBASIC23.37■■□□□ 1.33
Smarca1Q6PGB8 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Smarca1Q6PGB8 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
Smarca1Q6PGB8 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC23.36■■□□□ 1.33
Smarca1Q6PGB8 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
Smarca1Q6PGB8 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
Smarca1Q6PGB8 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
Smarca1Q6PGB8 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC23.36■■□□□ 1.33
Smarca1Q6PGB8 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Smarca1Q6PGB8 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Smarca1Q6PGB8 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Smarca1Q6PGB8 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
Smarca1Q6PGB8 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Smarca1Q6PGB8 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
Smarca1Q6PGB8 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC23.35■■□□□ 1.33
Smarca1Q6PGB8 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Smarca1Q6PGB8 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC23.35■■□□□ 1.33
Smarca1Q6PGB8 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC23.34■■□□□ 1.33
Smarca1Q6PGB8 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Smarca1Q6PGB8 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Smarca1Q6PGB8 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC23.34■■□□□ 1.33
Smarca1Q6PGB8 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Smarca1Q6PGB8 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
Smarca1Q6PGB8 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Smarca1Q6PGB8 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Smarca1Q6PGB8 Gm14117-201ENSMUST00000122417 843 ntBASIC23.33■■□□□ 1.33
Smarca1Q6PGB8 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC23.33■■□□□ 1.33
Smarca1Q6PGB8 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
Smarca1Q6PGB8 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Smarca1Q6PGB8 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Smarca1Q6PGB8 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
Smarca1Q6PGB8 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Smarca1Q6PGB8 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Smarca1Q6PGB8 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Smarca1Q6PGB8 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Smarca1Q6PGB8 Gm11847-201ENSMUST00000125165 1119 ntBASIC23.32■■□□□ 1.32
Smarca1Q6PGB8 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Smarca1Q6PGB8 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC23.32■■□□□ 1.32
Smarca1Q6PGB8 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC23.32■■□□□ 1.32
Smarca1Q6PGB8 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Smarca1Q6PGB8 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Smarca1Q6PGB8 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms