Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC20.21■□□□□ 0.83
Ptchd3Q0EEE2 Gm27502-201ENSMUST00000183495 199 ntBASIC20.21■□□□□ 0.83
Ptchd3Q0EEE2 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
Ptchd3Q0EEE2 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ptchd3Q0EEE2 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ptchd3Q0EEE2 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Ptchd3Q0EEE2 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ptchd3Q0EEE2 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Ptchd3Q0EEE2 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ptchd3Q0EEE2 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Ptchd3Q0EEE2 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ptchd3Q0EEE2 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ptchd3Q0EEE2 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC20.19■□□□□ 0.82
Ptchd3Q0EEE2 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ptchd3Q0EEE2 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ptchd3Q0EEE2 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ptchd3Q0EEE2 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ptchd3Q0EEE2 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ptchd3Q0EEE2 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ptchd3Q0EEE2 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ptchd3Q0EEE2 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ptchd3Q0EEE2 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ptchd3Q0EEE2 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC20.17■□□□□ 0.82
Ptchd3Q0EEE2 AC117769.4-201ENSMUST00000225679 685 ntBASIC20.17■□□□□ 0.82
Ptchd3Q0EEE2 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ptchd3Q0EEE2 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ptchd3Q0EEE2 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ptchd3Q0EEE2 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ptchd3Q0EEE2 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ptchd3Q0EEE2 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Ptchd3Q0EEE2 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Ptchd3Q0EEE2 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC20.16■□□□□ 0.82
Ptchd3Q0EEE2 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ptchd3Q0EEE2 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ptchd3Q0EEE2 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC20.15■□□□□ 0.82
Ptchd3Q0EEE2 Kdm3b-204ENSMUST00000224715 2032 ntBASIC20.15■□□□□ 0.82
Ptchd3Q0EEE2 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ptchd3Q0EEE2 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ptchd3Q0EEE2 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Ptchd3Q0EEE2 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
Ptchd3Q0EEE2 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Ptchd3Q0EEE2 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC20.14■□□□□ 0.81
Ptchd3Q0EEE2 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
Ptchd3Q0EEE2 Mir6538-201ENSMUST00000183713 110 ntBASIC20.14■□□□□ 0.81
Ptchd3Q0EEE2 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC20.14■□□□□ 0.81
Ptchd3Q0EEE2 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ptchd3Q0EEE2 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ptchd3Q0EEE2 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
Ptchd3Q0EEE2 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Ptchd3Q0EEE2 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ptchd3Q0EEE2 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC20.13■□□□□ 0.81
Ptchd3Q0EEE2 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ptchd3Q0EEE2 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ptchd3Q0EEE2 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ptchd3Q0EEE2 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Ptchd3Q0EEE2 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ptchd3Q0EEE2 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Ptchd3Q0EEE2 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ptchd3Q0EEE2 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
Ptchd3Q0EEE2 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ptchd3Q0EEE2 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ptchd3Q0EEE2 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ptchd3Q0EEE2 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ptchd3Q0EEE2 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC20.11■□□□□ 0.81
Ptchd3Q0EEE2 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ptchd3Q0EEE2 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ptchd3Q0EEE2 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ptchd3Q0EEE2 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ptchd3Q0EEE2 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ptchd3Q0EEE2 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Ptchd3Q0EEE2 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC20.1■□□□□ 0.81
Ptchd3Q0EEE2 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Ptchd3Q0EEE2 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC20.1■□□□□ 0.81
Ptchd3Q0EEE2 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Ptchd3Q0EEE2 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ptchd3Q0EEE2 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ptchd3Q0EEE2 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Ptchd3Q0EEE2 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Ptchd3Q0EEE2 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Ptchd3Q0EEE2 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ptchd3Q0EEE2 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ptchd3Q0EEE2 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
Ptchd3Q0EEE2 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ptchd3Q0EEE2 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ptchd3Q0EEE2 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC20.08■□□□□ 0.81
Ptchd3Q0EEE2 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ptchd3Q0EEE2 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Ptchd3Q0EEE2 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC20.08■□□□□ 0.81
Ptchd3Q0EEE2 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC20.08■□□□□ 0.81
Ptchd3Q0EEE2 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ptchd3Q0EEE2 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
Ptchd3Q0EEE2 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Ptchd3Q0EEE2 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ptchd3Q0EEE2 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Ptchd3Q0EEE2 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Ptchd3Q0EEE2 Gm14523-201ENSMUST00000117260 558 ntBASIC20.07■□□□□ 0.8
Ptchd3Q0EEE2 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ptchd3Q0EEE2 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Ptchd3Q0EEE2 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ptchd3Q0EEE2 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 14.2 ms