Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Cdx1P18111 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Cdx1P18111 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Cdx1P18111 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC16.76■□□□□ 0.27
Cdx1P18111 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Cdx1P18111 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cdx1P18111 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cdx1P18111 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cdx1P18111 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
Cdx1P18111 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
Cdx1P18111 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Cdx1P18111 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cdx1P18111 Gm37847-201ENSMUST00000192163 1497 ntBASIC16.74■□□□□ 0.27
Cdx1P18111 Gm31748-201ENSMUST00000194938 1497 ntBASIC16.74■□□□□ 0.27
Cdx1P18111 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cdx1P18111 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cdx1P18111 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cdx1P18111 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cdx1P18111 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
Cdx1P18111 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cdx1P18111 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cdx1P18111 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Cdx1P18111 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
Cdx1P18111 Gm7332-201ENSMUST00000118351 454 ntBASIC16.73■□□□□ 0.27
Cdx1P18111 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Cdx1P18111 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC16.73■□□□□ 0.27
Cdx1P18111 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC16.73■□□□□ 0.27
Cdx1P18111 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Cdx1P18111 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Cdx1P18111 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC16.73■□□□□ 0.27
Cdx1P18111 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cdx1P18111 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC16.72■□□□□ 0.27
Cdx1P18111 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cdx1P18111 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cdx1P18111 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Cdx1P18111 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cdx1P18111 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cdx1P18111 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Cdx1P18111 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cdx1P18111 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cdx1P18111 Gm9812-201ENSMUST00000061934 968 ntBASIC16.71■□□□□ 0.27
Cdx1P18111 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cdx1P18111 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cdx1P18111 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Cdx1P18111 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cdx1P18111 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Cdx1P18111 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cdx1P18111 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Cdx1P18111 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC16.7■□□□□ 0.26
Cdx1P18111 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cdx1P18111 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cdx1P18111 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cdx1P18111 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cdx1P18111 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cdx1P18111 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cdx1P18111 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Cdx1P18111 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cdx1P18111 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdx1P18111 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdx1P18111 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdx1P18111 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdx1P18111 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdx1P18111 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdx1P18111 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdx1P18111 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdx1P18111 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdx1P18111 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC16.69■□□□□ 0.26
Cdx1P18111 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdx1P18111 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdx1P18111 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC16.68■□□□□ 0.26
Cdx1P18111 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC16.68■□□□□ 0.26
Cdx1P18111 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Cdx1P18111 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Cdx1P18111 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdx1P18111 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Cdx1P18111 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cdx1P18111 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Cdx1P18111 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cdx1P18111 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Cdx1P18111 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
Cdx1P18111 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cdx1P18111 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cdx1P18111 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC16.67■□□□□ 0.26
Cdx1P18111 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cdx1P18111 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cdx1P18111 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdx1P18111 Gm14523-201ENSMUST00000117260 558 ntBASIC16.66■□□□□ 0.26
Cdx1P18111 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Cdx1P18111 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Cdx1P18111 Gm27502-201ENSMUST00000183495 199 ntBASIC16.66■□□□□ 0.26
Cdx1P18111 AC122317.2-201ENSMUST00000218708 1248 ntBASIC16.66■□□□□ 0.26
Cdx1P18111 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdx1P18111 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Cdx1P18111 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Cdx1P18111 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Cdx1P18111 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdx1P18111 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdx1P18111 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdx1P18111 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdx1P18111 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 57.3 ms