Protein–RNA interactions for Protein: P06798

Hoxa4, Homeobox protein Hox-A4, mousemouse

Predictions only

Length 285 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxa4P06798 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Hoxa4P06798 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Hoxa4P06798 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Hoxa4P06798 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC20.85■□□□□ 0.93
Hoxa4P06798 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC20.85■□□□□ 0.93
Hoxa4P06798 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Hoxa4P06798 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Hoxa4P06798 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC20.85■□□□□ 0.93
Hoxa4P06798 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Hoxa4P06798 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Hoxa4P06798 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Hoxa4P06798 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Hoxa4P06798 AC164883.3-201ENSMUST00000227396 1774 ntBASIC20.85■□□□□ 0.93
Hoxa4P06798 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Hoxa4P06798 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Hoxa4P06798 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Hoxa4P06798 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Hoxa4P06798 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Hoxa4P06798 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Hoxa4P06798 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Hoxa4P06798 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Hoxa4P06798 Gm26766-202ENSMUST00000227544 2347 ntBASIC20.83■□□□□ 0.93
Hoxa4P06798 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Hoxa4P06798 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Hoxa4P06798 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC20.83■□□□□ 0.93
Hoxa4P06798 Etf1-202ENSMUST00000180351 108 ntBASIC20.83■□□□□ 0.93
Hoxa4P06798 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC20.83■□□□□ 0.93
Hoxa4P06798 Gm7417-201ENSMUST00000192950 473 ntBASIC20.83■□□□□ 0.93
Hoxa4P06798 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC20.83■□□□□ 0.93
Hoxa4P06798 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Hoxa4P06798 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Hoxa4P06798 Gm17641-201ENSMUST00000166328 2350 ntBASIC20.82■□□□□ 0.92
Hoxa4P06798 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Hoxa4P06798 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Hoxa4P06798 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Hoxa4P06798 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Hoxa4P06798 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Hoxa4P06798 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Hoxa4P06798 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Hoxa4P06798 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC20.81■□□□□ 0.92
Hoxa4P06798 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
Hoxa4P06798 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Hoxa4P06798 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
Hoxa4P06798 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Hoxa4P06798 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Hoxa4P06798 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Hoxa4P06798 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Hoxa4P06798 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC20.8■□□□□ 0.92
Hoxa4P06798 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Hoxa4P06798 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Hoxa4P06798 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC20.8■□□□□ 0.92
Hoxa4P06798 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Hoxa4P06798 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Hoxa4P06798 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Hoxa4P06798 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC20.79■□□□□ 0.92
Hoxa4P06798 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Hoxa4P06798 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Hoxa4P06798 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC20.78■□□□□ 0.92
Hoxa4P06798 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
Hoxa4P06798 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Hoxa4P06798 Gm14117-201ENSMUST00000122417 843 ntBASIC20.78■□□□□ 0.92
Hoxa4P06798 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Hoxa4P06798 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Hoxa4P06798 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Hoxa4P06798 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Hoxa4P06798 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Hoxa4P06798 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC20.78■□□□□ 0.92
Hoxa4P06798 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Hoxa4P06798 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Hoxa4P06798 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC20.77■□□□□ 0.92
Hoxa4P06798 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC20.77■□□□□ 0.92
Hoxa4P06798 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Hoxa4P06798 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Hoxa4P06798 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Hoxa4P06798 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Hoxa4P06798 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Hoxa4P06798 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Hoxa4P06798 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Hoxa4P06798 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC20.76■□□□□ 0.91
Hoxa4P06798 Gm43403-201ENSMUST00000198011 1786 ntBASIC20.76■□□□□ 0.91
Hoxa4P06798 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Hoxa4P06798 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Hoxa4P06798 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Hoxa4P06798 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Hoxa4P06798 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC20.75■□□□□ 0.91
Hoxa4P06798 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Hoxa4P06798 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Hoxa4P06798 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Hoxa4P06798 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Hoxa4P06798 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Hoxa4P06798 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Hoxa4P06798 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Hoxa4P06798 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Hoxa4P06798 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Hoxa4P06798 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Hoxa4P06798 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Hoxa4P06798 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Hoxa4P06798 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Hoxa4P06798 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Hoxa4P06798 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms