Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Pcdha4O88689 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Pcdha4O88689 Gm10620-201ENSMUST00000098379 1332 ntBASIC23.61■■□□□ 1.37
Pcdha4O88689 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Pcdha4O88689 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
Pcdha4O88689 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Pcdha4O88689 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC23.61■■□□□ 1.37
Pcdha4O88689 Gm40881-201ENSMUST00000223397 166 ntBASIC23.61■■□□□ 1.37
Pcdha4O88689 Gm9959-201ENSMUST00000068277 390 ntBASIC23.61■■□□□ 1.37
Pcdha4O88689 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Pcdha4O88689 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
Pcdha4O88689 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Pcdha4O88689 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC23.6■■□□□ 1.37
Pcdha4O88689 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Pcdha4O88689 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC23.59■■□□□ 1.37
Pcdha4O88689 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Pcdha4O88689 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
Pcdha4O88689 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Pcdha4O88689 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Pcdha4O88689 Gm37415-201ENSMUST00000192265 2054 ntBASIC23.59■■□□□ 1.37
Pcdha4O88689 Gm17641-201ENSMUST00000166328 2350 ntBASIC23.59■■□□□ 1.37
Pcdha4O88689 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
Pcdha4O88689 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Pcdha4O88689 Rps24-207ENSMUST00000224568 714 ntBASIC23.58■■□□□ 1.37
Pcdha4O88689 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC23.58■■□□□ 1.37
Pcdha4O88689 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
Pcdha4O88689 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Pcdha4O88689 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Pcdha4O88689 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Pcdha4O88689 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC23.57■■□□□ 1.36
Pcdha4O88689 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Pcdha4O88689 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Pcdha4O88689 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
Pcdha4O88689 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC23.57■■□□□ 1.36
Pcdha4O88689 Gm45102-201ENSMUST00000207427 857 ntBASIC23.57■■□□□ 1.36
Pcdha4O88689 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Pcdha4O88689 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
Pcdha4O88689 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
Pcdha4O88689 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
Pcdha4O88689 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
Pcdha4O88689 Etf1-202ENSMUST00000180351 108 ntBASIC23.56■■□□□ 1.36
Pcdha4O88689 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC23.56■■□□□ 1.36
Pcdha4O88689 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Pcdha4O88689 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
Pcdha4O88689 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
Pcdha4O88689 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
Pcdha4O88689 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Pcdha4O88689 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
Pcdha4O88689 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
Pcdha4O88689 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Pcdha4O88689 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
Pcdha4O88689 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Pcdha4O88689 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
Pcdha4O88689 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Pcdha4O88689 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
Pcdha4O88689 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC23.54■■□□□ 1.36
Pcdha4O88689 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
Pcdha4O88689 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
Pcdha4O88689 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Pcdha4O88689 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Pcdha4O88689 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Pcdha4O88689 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Pcdha4O88689 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC23.53■■□□□ 1.36
Pcdha4O88689 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC23.53■■□□□ 1.36
Pcdha4O88689 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC23.53■■□□□ 1.36
Pcdha4O88689 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Pcdha4O88689 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Pcdha4O88689 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Pcdha4O88689 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC23.52■■□□□ 1.36
Pcdha4O88689 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC23.52■■□□□ 1.36
Pcdha4O88689 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC23.52■■□□□ 1.36
Pcdha4O88689 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Pcdha4O88689 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Pcdha4O88689 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.35
Pcdha4O88689 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Pcdha4O88689 Gm14117-201ENSMUST00000122417 843 ntBASIC23.51■■□□□ 1.35
Pcdha4O88689 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
Pcdha4O88689 Gm7417-201ENSMUST00000192950 473 ntBASIC23.51■■□□□ 1.35
Pcdha4O88689 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC23.51■■□□□ 1.35
Pcdha4O88689 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Pcdha4O88689 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Pcdha4O88689 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
Pcdha4O88689 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC23.51■■□□□ 1.35
Pcdha4O88689 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Pcdha4O88689 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Pcdha4O88689 AC164883.3-201ENSMUST00000227396 1774 ntBASIC23.5■■□□□ 1.35
Pcdha4O88689 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC23.5■■□□□ 1.35
Pcdha4O88689 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Pcdha4O88689 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Pcdha4O88689 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC23.5■■□□□ 1.35
Pcdha4O88689 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
Pcdha4O88689 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Pcdha4O88689 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC23.49■■□□□ 1.35
Pcdha4O88689 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Pcdha4O88689 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC23.49■■□□□ 1.35
Pcdha4O88689 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC23.49■■□□□ 1.35
Pcdha4O88689 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
Pcdha4O88689 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Pcdha4O88689 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Pcdha4O88689 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms