Protein–RNA interactions for Protein: A0A075B5Z4

Trav1, T cell receptor alpha variable 1 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav1A0A075B5Z4 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
Trav1A0A075B5Z4 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trav1A0A075B5Z4 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trav1A0A075B5Z4 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trav1A0A075B5Z4 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trav1A0A075B5Z4 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Trav1A0A075B5Z4 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trav1A0A075B5Z4 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trav1A0A075B5Z4 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Trav1A0A075B5Z4 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC19.62■□□□□ 0.73
Trav1A0A075B5Z4 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trav1A0A075B5Z4 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trav1A0A075B5Z4 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trav1A0A075B5Z4 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Trav1A0A075B5Z4 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Trav1A0A075B5Z4 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trav1A0A075B5Z4 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Trav1A0A075B5Z4 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trav1A0A075B5Z4 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Trav1A0A075B5Z4 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trav1A0A075B5Z4 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trav1A0A075B5Z4 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trav1A0A075B5Z4 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trav1A0A075B5Z4 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trav1A0A075B5Z4 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Trav1A0A075B5Z4 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC19.6■□□□□ 0.73
Trav1A0A075B5Z4 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC19.6■□□□□ 0.73
Trav1A0A075B5Z4 Gm5067-201ENSMUST00000170449 1009 ntBASIC19.6■□□□□ 0.73
Trav1A0A075B5Z4 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Trav1A0A075B5Z4 Gm44949-201ENSMUST00000206423 1450 ntBASIC19.6■□□□□ 0.73
Trav1A0A075B5Z4 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trav1A0A075B5Z4 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC19.59■□□□□ 0.73
Trav1A0A075B5Z4 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC19.59■□□□□ 0.73
Trav1A0A075B5Z4 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trav1A0A075B5Z4 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Trav1A0A075B5Z4 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Trav1A0A075B5Z4 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
Trav1A0A075B5Z4 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Trav1A0A075B5Z4 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC19.58■□□□□ 0.72
Trav1A0A075B5Z4 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trav1A0A075B5Z4 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
Trav1A0A075B5Z4 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trav1A0A075B5Z4 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trav1A0A075B5Z4 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trav1A0A075B5Z4 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trav1A0A075B5Z4 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Trav1A0A075B5Z4 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trav1A0A075B5Z4 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trav1A0A075B5Z4 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Trav1A0A075B5Z4 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trav1A0A075B5Z4 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Trav1A0A075B5Z4 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC19.56■□□□□ 0.72
Trav1A0A075B5Z4 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC19.56■□□□□ 0.72
Trav1A0A075B5Z4 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trav1A0A075B5Z4 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trav1A0A075B5Z4 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trav1A0A075B5Z4 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trav1A0A075B5Z4 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trav1A0A075B5Z4 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trav1A0A075B5Z4 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trav1A0A075B5Z4 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC19.55■□□□□ 0.72
Trav1A0A075B5Z4 Gm11847-201ENSMUST00000125165 1119 ntBASIC19.55■□□□□ 0.72
Trav1A0A075B5Z4 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trav1A0A075B5Z4 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trav1A0A075B5Z4 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trav1A0A075B5Z4 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC19.55■□□□□ 0.72
Trav1A0A075B5Z4 Gm5913-201ENSMUST00000119397 1399 ntBASIC19.55■□□□□ 0.72
Trav1A0A075B5Z4 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trav1A0A075B5Z4 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Trav1A0A075B5Z4 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Trav1A0A075B5Z4 Gm28536-201ENSMUST00000190971 1317 ntBASIC19.54■□□□□ 0.72
Trav1A0A075B5Z4 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Trav1A0A075B5Z4 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trav1A0A075B5Z4 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trav1A0A075B5Z4 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trav1A0A075B5Z4 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Trav1A0A075B5Z4 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Trav1A0A075B5Z4 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trav1A0A075B5Z4 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trav1A0A075B5Z4 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Trav1A0A075B5Z4 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Trav1A0A075B5Z4 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trav1A0A075B5Z4 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC19.53■□□□□ 0.72
Trav1A0A075B5Z4 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trav1A0A075B5Z4 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trav1A0A075B5Z4 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.72
Trav1A0A075B5Z4 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trav1A0A075B5Z4 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Trav1A0A075B5Z4 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC19.52■□□□□ 0.72
Trav1A0A075B5Z4 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trav1A0A075B5Z4 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trav1A0A075B5Z4 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Trav1A0A075B5Z4 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Trav1A0A075B5Z4 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Trav1A0A075B5Z4 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trav1A0A075B5Z4 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trav1A0A075B5Z4 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC19.51■□□□□ 0.71
Trav1A0A075B5Z4 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Trav1A0A075B5Z4 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Trav1A0A075B5Z4 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms